PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469758.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 476aa    MW: 53160.7 Da    PI: 8.6284
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.4e-1718981298
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     s  l +p kf+++++gk   s t  l  +sg+sW + l   +++++ ++ +GW + vk++ L++gD +vF++dg+  f  +v +f+
  XP_016469758.1 18 HSETLKIPSKFIKHMEGKA--SGTAFLVGPSGNSWPMDL--IQQDDGLFFHNGWASLVKDHCLESGDALVFRYDGDLHF--TVLAFD 98
                    56679*******7777774..449***************..99999***************************997666..787776 PP
2B357.82e-18236330198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f kv+++ +v+ s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e  l+v
  XP_016469758.1 236 FTKVMKRFNVSGSYTLNIPYQFATEHL--PKCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFELVRKCE--LRV 326
                     889999999*****************6..34999****************77566666699***********************998554..588 PP

                     EEE- CS
              B3  95 kvfr 98 
                     +v+r
  XP_016469758.1 327 HVLR 330
                     8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-233102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-224101IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-15798No hitNo description
PROSITE profilePS5086313.2817100IPR003340B3 DNA binding domain
SMARTSM010197.8E-129100IPR003340B3 DNA binding domain
PfamPF023626.5E-151699IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-24228330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-25229331IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-20234330No hitNo description
SMARTSM010192.5E-16236332IPR003340B3 DNA binding domain
PROSITE profilePS5086313.916236332IPR003340B3 DNA binding domain
PfamPF023626.3E-16236330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MWDARRPHFL VGFNPSIHSE TLKIPSKFIK HMEGKASGTA FLVGPSGNSW PMDLIQQDDG  60
LFFHNGWASL VKDHCLESGD ALVFRYDGDL HFTVLAFDES SCEKEAAYNA DCSQGATNLY  120
NLALKKRDRG NSALLECVVE GVPKKMRSTQ IPSECTAEDA VCSNGRIYTS SFLNEMENAG  180
NASSNTVTIA VPSQTEIVCS NSEVKTGNGT SEEPMWLSAQ EAEKVARSFT SSFPNFTKVM  240
KRFNVSGSYT LNIPYQFATE HLPKCKVKIL LHNLKGKTWT VNSIPTTRVQ TSHTFCGGWL  300
SFVRDNNIDL GDICIFELVR KCELRVHVLR VEKEGNDYSS KVAKAKTFAK KGSAHGKEKH  360
SNMLKSHQLC LSKISSGDSV IRKPAQDKQG SFTKSCMSMK SVPEEKLAAE SFISNFPHFV  420
RIMKKFNISG SYTLVSSFLH VISFYILLLS RRFPSHLIHS LFLKLYVKDI VCQHDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145241e-135CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9754431e-135HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-135HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469758.10.0PREDICTED: B3 domain-containing protein Os03g0619600-like
TrEMBLA0A1S3ZZF00.0A0A1S3ZZF0_TOBAC; B3 domain-containing protein Os03g0619600-like
STRINGXP_009588428.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-20B3 family protein