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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016469446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 317aa MW: 36684.4 Da PI: 10.682 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.8 | 8.3e-13 | 41 | 114 | 11 | 89 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 lks +lp kf++++g+k+++ l+++ e+ rsW++kl + +++++++ W eF +an++k+gD ++F+++ + e XP_016469446.1 41 LKS--KRLPGKFTKANGLKNKK-CGLIIRGERQRSWNLKL--YTSYSQVYIGGKWGEFRDANDIKVGDRIMFEVVANGE 114 444..489********777544.47999************..66667889***********************887533 PP | |||||||
2 | B3 | 56.4 | 5.6e-18 | 179 | 265 | 5 | 96 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++++l+++ l++p +fa++hg+ ++ t++++d + rsW+++l ++ +++++GW++F+ an LkegD v+F + +++++ +k+ XP_016469446.1 179 TMKPYYLSKHFLRVPSPFARQHGLRDRK-CTIMIRD-EQRSWTFTL--YSCGTVTYIGGGWRDFCIANCLKEGDRVMFGIVA-NGEKPILKF 265 57899999999***********999766.5999999.779******..888888*************************876.555566665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-11 | 27 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.193 | 29 | 123 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.28E-14 | 30 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.8E-5 | 33 | 126 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-11 | 41 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.19E-9 | 45 | 108 | No hit | No description |
SuperFamily | SSF101936 | 5.3E-20 | 171 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 172 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.60E-15 | 174 | 267 | No hit | No description |
PROSITE profile | PS50863 | 11.392 | 175 | 268 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-15 | 176 | 269 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-15 | 179 | 266 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MKERWSLRLP SLIQVTVTES MRSICKTKKT HILLKILPRN LKSKRLPGKF TKANGLKNKK 60 CGLIIRGERQ RSWNLKLYTS YSQVYIGGKW GEFRDANDIK VGDRIMFEVV ANGERPIWKF 120 HHLRKNASLQ PEGMKTNSDT ERVSTPEKPK SNTISSREAV PNVEAAKDMH LGHPHFICTM 180 KPYYLSKHFL RVPSPFARQH GLRDRKCTIM IRDEQRSWTF TLYSCGTVTY IGGGWRDFCI 240 ANCLKEGDRV MFGIVANGEK PILKFHDLRG NASLQPERFH SRSGFQEQTL VAELHFFSFH 300 FSDSIFSSCT FKRNNRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469446.1 | 0.0 | PREDICTED: putative B3 domain-containing protein REM15 isoform X6 | ||||
TrEMBL | A0A1S3ZYS1 | 0.0 | A0A1S3ZYS1_TOBAC; putative B3 domain-containing protein REM15 isoform X6 | ||||
STRING | XP_009597618.1 | 1e-168 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 3e-19 | B3 family protein |