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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016469246.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 27264 Da PI: 9.0229 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 4e-20 | 102 | 152 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ taeeAa a+++a+ +++g XP_016469246.1 102 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAALAYDKAAYRMRG 152 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 101 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-23 | 102 | 162 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-37 | 102 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.22E-31 | 102 | 161 | No hit | No description |
PROSITE profile | PS51032 | 24.368 | 102 | 160 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-14 | 102 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MYQPISTEFP VYHRTSSFSS LMPCLTDTWG DLPLKVDDSE DMVIYGLLSD ALTTGWTPFN 60 LTSTEIKAEP REEIEPATSP VPSVAPPAET TTAQAVVPKG RHYRGVRQRP WGKFAAEIRD 120 PAKNGARVWL GTYETAEEAA LAYDKAAYRM RGSKALLNFP HRIGLNEPEP VRLTVKRRSP 180 EPAVKRRSPE PASSSISPAS ENSLPKRRRK AVAAKQAELE VQSRSNVMQV GCQMEQFPVG 240 EQLLVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-37 | 99 | 167 | 2 | 70 | ATERF1 |
3gcc_A | 1e-37 | 99 | 167 | 2 | 70 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016264 | 0.0 | AB016264.1 Nicotiana sylvestris nserf2 gene for ethylene-responsive element binding factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469246.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 2 | ||||
Swissprot | Q9LW50 | 1e-165 | ERF2_NICSY; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A1S3ZY77 | 0.0 | A0A1S3ZY77_TOBAC; ethylene-responsive transcription factor 2 | ||||
STRING | XP_009765938.1 | 1e-164 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4054 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 6e-51 | ethylene responsive element binding factor 1 |