PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016469195.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 270aa MW: 30739.8 Da PI: 6.9782 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.1 | 1.8e-14 | 92 | 138 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRRdriN +++Lr+l+P + +K++Ka+ L+ +ve++k+L XP_016469195.1 92 RSHSEAEKRRRDRINAQLSTLRKLIPRS-----EKMDKAALLRSVVEHVKDL 138 78************************98.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.298 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-15 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-14 | 92 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-12 | 92 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-13 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.94E-9 | 98 | 139 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 4.4E-5 | 179 | 240 | No hit | No description |
CDD | cd04873 | 2.94E-8 | 180 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MPRSLREKLE HRDMMDNSSC SEYWPETETE TETETHFHHF QEVAVASPFL LPLIPNTCDD 60 TSFQLCENPC YWSQHLSEED ASASANASAA SRSHSEAEKR RRDRINAQLS TLRKLIPRSE 120 KMDKAALLRS VVEHVKDLKG RAKEISKVVN TPTDIDEVII EHLDEEENHE NSSNSIFLKV 180 CLCCDDRPEL FSELNRALKN MKLTTVEANI TSLGGRIKCV FVVKSINGVC LNSLKQSLRV 240 VLSRIAISPS TSNYRIKSKR QRFFLPANFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 261 | KSKRQR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 2e-34 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600874.1 | 0.0 | PREDICTED: transcription factor bHLH51-like | ||||
Refseq | XP_016469195.1 | 0.0 | PREDICTED: transcription factor bHLH51-like | ||||
TrEMBL | A0A1S3ZXL9 | 0.0 | A0A1S3ZXL9_TOBAC; transcription factor bHLH51-like | ||||
STRING | XP_009600874.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5820 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 6e-36 | bHLH family protein |