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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016469116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 151aa MW: 17108.5 Da PI: 10.1698 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41.1 | 6e-13 | 29 | 107 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+e+A+ GFsv+k++s+++ ++ t++C + ++++ ++ + +Cka+l+ +++ g w+v+k++++HnH+l p XP_016469116.1 29 FYKEHAQLKGFSVVKRNSNNK-GGDTARYITYCCDRARIHKTKFTT----------KSNNCKARLTAVLDDFGCWHVSKVVHDHNHDLLP 107 9**************998887.555588999***999998887655..........7789***************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-10 | 29 | 107 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MENGFTKDDV VVGPISGMRF RDKDSLFAFY KEHAQLKGFS VVKRNSNNKG GDTARYITYC 60 CDRARIHKTK FTTKSNNCKA RLTAVLDDFG CWHVSKVVHD HNHDLLPSIS RLMAGHRSVC 120 DSLKRDLLTH DRSSIRPSKN IRRAEVQCGG P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469116.1 | 1e-110 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A1S3ZXU6 | 1e-108 | A0A1S3ZXU6_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
STRING | XP_009760738.1 | 1e-108 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 1e-09 | FAR1 family protein |