PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016469053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 35728.2 Da PI: 8.5291 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.9 | 9.7e-50 | 30 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk 95 pGfrFhPtdeelv +yL++kve++++ l + ik++diyk++PwdLpk +++e+ewy+++kr +ky+++ r+nr ++ sg+Wkatg dk+++ XP_016469053.1 30 LPGFRFHPTDEELVGFYLRRKVEKRPIAL-QLIKQMDIYKYDPWDLPKGSNKGENEWYYYCKRGRKYKNSVRPNRvTAGSGFWKATGIDKPIYG- 122 59*************************99.89***************98899999********************5556***************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 kge++glkk+Lv+y+g+a kg+kt+W+mhe+rl XP_016469053.1 123 KGEVIGLKKSLVYYRGSAGKGTKTEWMMHEFRL 155 999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.077 | 29 | 182 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.62E-54 | 29 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-24 | 31 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MEVEKIHCSI VTNNNDNKLE AEEDDEDVQL PGFRFHPTDE ELVGFYLRRK VEKRPIALQL 60 IKQMDIYKYD PWDLPKGSNK GENEWYYYCK RGRKYKNSVR PNRVTAGSGF WKATGIDKPI 120 YGKGEVIGLK KSLVYYRGSA GKGTKTEWMM HEFRLPNNKY LHAANNIAQE AEAWTLCRIL 180 KRNASYRKFV PDWKEVAAAA AAAAKQQRNA VPKICSNNII NSDSPRNSQI YISFSTPPVV 240 KQNTAYIDDA ENKQLLNVGQ QSSGSTNDAS MLSTVAAASN SSLLNSPLDF NEWLENGNWD 300 ELKSIFDLSF DPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-50 | 17 | 188 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-50 | 17 | 188 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-50 | 17 | 188 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-50 | 17 | 188 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-50 | 22 | 188 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-50 | 22 | 188 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-50 | 22 | 188 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-50 | 22 | 188 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-50 | 22 | 188 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-50 | 22 | 188 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-50 | 22 | 188 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-50 | 22 | 188 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-50 | 17 | 188 | 2 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-50 | 17 | 188 | 2 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469053.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A1S3ZXI1 | 0.0 | A0A1S3ZXI1_TOBAC; transcription factor JUNGBRUNNEN 1-like | ||||
STRING | XP_009767292.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-82 | NAC domain containing protein 42 |