![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016468780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 698aa MW: 78743 Da PI: 6.0746 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 350.6 | 2.6e-107 | 321 | 694 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL++cAeav+s + + ++L+++++++sp gdp+ Rla +f++AL+ar a+ + +++++ ++s + ++ l+a++++ ++P+ ++s++ XP_016468780.1 321 TSLLTRCAEAVASYNSKTFVEVLSKIRQHSSPLGDPTARLAYCFANALEARFAG---GGGDTITTPKKSILSAADFLKAFQVYITACPFKRMSNI 412 689***************************************************...4444455555555569********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN+ I + ++++ ++HiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g +e++eetg+rL+++++++gvpfe+++ +ak+++d+ XP_016468780.1 413 FANKSIAKLTNEAPKIHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLENYCKRFGVPFEYKA-IAKKWDDI 506 ********************************************************9*****************************.7******* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +le+L ++++E+++Vn+ ++l++++de+v ++ +r++vLkl+k+++P+ +v+ +a +n++ F +rf eal ++s+ fd++ea++ re+e XP_016468780.1 507 KLEDLIIEQDETVVVNCLYRLKNVPDETVLSHGsnsPRNAVLKLIKEINPHWFVHGIVNAMYNASFFTTRFREALFHFSSQFDMFEATMTREDEG 601 **************************98755433459********************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ E+e++gr+i+nv+aceg+er+er e++++W+ r + aGF+++pl+++++k++k+ +r+++ + + v+e+s+++++gWk+r ++++S+W+ XP_016468780.1 602 RMIFEQEVFGRDIRNVIACEGTERVERPESYKQWSVRNQIAGFRQLPLNQDIVKEVKAKVRMFYHRDFLVDEDSNWMLQGWKGRIMYALSVWQ 694 ****************************************************************999*************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.085 | 294 | 674 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.9E-105 | 321 | 694 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 698 aa Download sequence Send to blast |
MNTNTYFPSV DHRSSDGLEL CHRFAMTSTN LGNEFSSADH HDVVFFSSSC GTSSNNDNVV 60 VEGGGGCDQT VVESDYFDGV FKYIQQMLLE EDDDLESRPC MFQDCVALQA AEKSFYDALT 120 DNNNNDPTIV EHCSSTDFPV NHAFISTTHC LLDDNFNHFL DQPNLISDFN ASNTGIRGNT 180 PLNNNCQAAA AANGDHRNIY YGVNSPNTNN QGGTSKSEGK KKHNREECGE SSNGPNSKQF 240 ASNGTEETEE QTHEEYYDKA LLCPDMNPAF YVEDSCDDGS RSSSENVAWD KQKSRHIKQS 300 KRGRPRGSKK GVKTNEVVDL TSLLTRCAEA VASYNSKTFV EVLSKIRQHS SPLGDPTARL 360 AYCFANALEA RFAGGGGDTI TTPKKSILSA ADFLKAFQVY ITACPFKRMS NIFANKSIAK 420 LTNEAPKIHI IDFGILYGFQ WPCIIHGISL RPGGPPKLKI TGIDFPQPGF RPAERVEETG 480 RRLENYCKRF GVPFEYKAIA KKWDDIKLED LIIEQDETVV VNCLYRLKNV PDETVLSHGS 540 NSPRNAVLKL IKEINPHWFV HGIVNAMYNA SFFTTRFREA LFHFSSQFDM FEATMTREDE 600 GRMIFEQEVF GRDIRNVIAC EGTERVERPE SYKQWSVRNQ IAGFRQLPLN QDIVKEVKAK 660 VRMFYHRDFL VDEDSNWMLQ GWKGRIMYAL SVWQPIHK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-49 | 320 | 694 | 5 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016468780.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
TrEMBL | A0A1S3ZWH1 | 0.0 | A0A1S3ZWH1_TOBAC; scarecrow-like protein 30 | ||||
STRING | XP_009607088.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-156 | SCARECROW-like 14 |