PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468020.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 325aa    MW: 35999.4 Da    PI: 6.9253
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09168215455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  XP_016468020.1 168 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 215
                     8*************************9....89999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.60E-9162219No hitNo description
SuperFamilySSF474593.27E-15162232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-15164229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-7168215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-9170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGEMGTASSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYPPPPPP PIFPSDAALI  60
DRAFKFSVFA AAAGISPESN STLSNSGSKS LLVKQEPLDS EFNQNSSPIT VSNPTVNQKT  120
TKRKEREKKV KETSSKKGKK STNNTSEDDA EKLPYVHVRA RRGQATDSHS LAERARREKI  180
NARMKLLQEL VPGCNKISGT AMVLDEIINH VQSLQRQVEF LSMRLAAVNP SVDFNLDNLF  240
APERSGSHVE SNLPDMIVPP IWADGQTSGN RNQYQHLWHL EGFHQPVWGR VEDNSSFITP  300
ENSLLTYDSS ANSASLHPNQ LKMEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468020.10.0PREDICTED: transcription factor bHLH48-like isoform X1
TrEMBLA0A1S3ZUC40.0A0A1S3ZUC4_TOBAC; transcription factor bHLH48-like isoform X1
STRINGXP_009795428.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.27e-68bHLH family protein