PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016467968.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 340aa    MW: 37288.4 Da    PI: 7.703
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016467968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-0880104126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC+ f++ G C+y  +C+FaHg
  XP_016467968.1  80 YKTKLCCKFRA-GVCPYITNCNFAHG 104
                     9**********.*************8 PP
2zf-CCCH18.73e-06165185626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ f+    C+yGd+C+F H+
  XP_016467968.1 165 CKKFYTEEGCPYGDSCTFLHD 185
                     99999999************7 PP
3zf-CCCH44.32.8e-14219244126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_016467968.1 219 WKTRICNKWETTGYCPFGSKCHFAHG 244
                     8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-876110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-1577112IPR000571Zinc finger, CCCH-type
SMARTSM003560.004879105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.81279106IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-580104IPR000571Zinc finger, CCCH-type
SMARTSM003560.85159186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328159187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7160187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-8161187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-17215249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-10215249IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-9218245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422218246IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-11219244IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MIQDSAASSG GFGSWGPNFS DQAVWATEDD YRAWNSNETS SNSQNRSGSE PPNKKSRNVQ  60
GLDPRDIVTS SSKAIGKMFY KTKLCCKFRA GVCPYITNCN FAHGIEELRK PPPNWQDIVA  120
AHESERGGGA GGVLAVEPRE EHQIPILTSP DLRGESQRSA KGRHCKKFYT EEGCPYGDSC  180
TFLHDEQSRA RESVAISVTP TVGGFGNNAT GTTLKPSNWK TRICNKWETT GYCPFGSKCH  240
FAHGVAELNR FGGGPVETEG KDSLFVPPDL KQAGSSFKTT ESTVPSTISA LHTDVYHLGQ  300
GVQVQRPSSI VERPGQRFFQ KWKGPDKISK IYGDWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0140730.0BT014073.1 Lycopersicon esculentum clone 133173F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629623.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like isoform X2
SwissprotQ9LQM31e-122C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1S3ZU960.0A0A1S3ZU96_TOBAC; zinc finger CCCH domain-containing protein 12-like isoform X1
TrEMBLA0A1S3ZUC50.0A0A1S3ZUC5_TOBAC; zinc finger CCCH domain-containing protein 12-like isoform X2
STRINGXP_009767653.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-123C3H family protein