PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016467805.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 727aa    MW: 78684.2 Da    PI: 7.045
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016467805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07309329526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd C +aHg
  XP_016467805.1 309 PCPEFRK-GACRRGDMCEYAHG 329
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.33E-1735163IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.1E-1936208IPR020683Ankyrin repeat-containing domain
CDDcd002045.82E-1636162No hitNo description
PfamPF127962.7E-1071153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.75984186IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003384114IPR002110Ankyrin repeat
PRINTSPR014152.6E-585100IPR002110Ankyrin repeat
CDDcd002046.31E-8119207No hitNo description
SMARTSM002481.1E-4119151IPR002110Ankyrin repeat
PROSITE profilePS5008812.022119154IPR002110Ankyrin repeat
PRINTSPR014152.6E-5138152IPR002110Ankyrin repeat
SMARTSM003569.5E-6304330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981309331IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4309329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035668339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MCTGPERPNS SSSTNQSITD SKSSMKGITK LTVETEDSFS SLLELAANND LEGFKRSVER  60
GASAIDEAGL WLVRKKGAKQ IVNEERTPLM VAATYGSLDV LKLIISNPVV DVNRACGPNK  120
CTALHCATSG GSVNAVDVVK FLLSAGADPN IEDSNGQRPV DVIVVPPKLH GARASLEELL  180
LKNSSDGSVG ECKLRVSVTT SNGSSPILSS SPENGSPFSP SDSLCSPMAS KFSDIPANSA  240
PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARRVCFFAH  360
TTEELRPLYV STGSAVPSPR SAASAATVMD MAAALNLFPG SPSAHSVMSP PAFNQPMSPT  420
ANGMSHPSAP WPQPNVPALH LPGSNLQSSR LRSSLSARDI PPEDFNMLHD FDAQQLVLND  480
MACYSQPHPN SLNRSGRSNT LTPSNLEELF SAEITSSPRY SDQAAASGVF SPSHKSAFFN  540
QFQQQQSMLS PINTNVFSPK NMEHPLLQAS FGVSSPGRMS PRSMEPISPM SARLSAFAQR  600
EKQQQQLRSL SSRDLGSNNA SIVGSPVGNS WSNWGSPTGK VDWSVNGSGV GRMRRSSSFE  660
QLNNGEEPDL SWVQSLVKES PSEMKEKQAA PISGTVPSGE SLSKVDSVDH SVLGAWLEQM  720
QLDQLVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016467805.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3ZTR40.0A0A1S3ZTR4_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]