PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016467621.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 257aa    MW: 29035.5 Da    PI: 6.5626
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016467621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.31.8e-3355108357
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                     k +YkeClkNhA+s+GghavDGCgEfmp+ ge+g+ ++lkCaAC+CHRnFHR+ +
  XP_016467621.1  55 KPKYKECLKNHAVSIGGHAVDGCGEFMPA-GEDGSLDSLKCAACNCHRNFHRKIT 108
                     679*************************9.999*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015664.6E-3157106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.8E-3057107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2157109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.92858107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-29167237IPR009057Homeodomain-like
SuperFamilySSF466898.97E-18168236IPR009057Homeodomain-like
TIGRFAMsTIGR015655.1E-25179235IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDFENHQVEE EETEPPPSYD DSLNNSNSTH PTKMPSPTPM ELEPLAAVHT WHNNKPKYKE  60
CLKNHAVSIG GHAVDGCGEF MPAGEDGSLD SLKCAACNCH RNFHRKITQP PLITAAEPPP  120
FVNYHSPYYR SLPPPCGYLQ YHVAPQQRPL ALPSTSGGYR EDQEDMSNLN NSGGSGSNKR  180
FRTKFSQEQK EKMQELADKL GWRIQREDEE LVQQLCNETG VRRQVFKVWM HNNKNTLGTC  240
GHYCNIAVAC ITIFLHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-241772411680ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016467621.10.0PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotA2Z2597e-65ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A1S3ZT810.0A0A1S3ZT81_TOBAC; zinc-finger homeodomain protein 2-like
STRINGXP_009619186.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-61homeobox protein 22