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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016467287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 500aa MW: 57060.9 Da PI: 10.6698 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.5e-08 | 12 | 48 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +++W t+E+++l av+++G+++W+ +a+++ Rt + XP_016467287.1 12 KMNWGTWEELILGGAVRRHGTRDWNVVASELR-ARTVY 48 689*****************************.88865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.6E-5 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.272 | 11 | 65 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-5 | 12 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-6 | 12 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.06E-4 | 14 | 61 | No hit | No description |
SuperFamily | SSF47370 | 1.7E-18 | 265 | 371 | IPR001487 | Bromodomain |
SMART | SM00297 | 1.1E-16 | 267 | 371 | IPR001487 | Bromodomain |
CDD | cd04369 | 4.16E-15 | 270 | 366 | No hit | No description |
Gene3D | G3DSA:1.20.920.10 | 4.6E-17 | 270 | 396 | IPR001487 | Bromodomain |
Pfam | PF00439 | 3.4E-11 | 276 | 355 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 10.829 | 282 | 352 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MEGETMGVGP RKMNWGTWEE LILGGAVRRH GTRDWNVVAS ELRARTVYPY CFTPEACRTR 60 YEDLRKRYSG CNAWFEELRK RRVEELKREL ERSESSIGFL ESKIESLKAE RKQSGQIDYG 120 LGRTESPAPP TKSEDIESFV KDEAKDGLSA GSFTLDIRTN QSPESQVPTI PSTDVKLERS 180 ESCERDKVPS TSKVTEASNG NGGAVRKRRG KRRRKDTVWD AKEGSIEESD NVCSTSLAST 240 SHCKEALTSC EQSIRHSAVS DHRGGLSRFR NDDLMRIFTS ITQHEAAMVF RHRLDSQKRA 300 RYKKMIRRHM DIETVKSRLA SWSIKTPGEL FRDFLLLANN AMVFYSKRTR EYKAAMALRD 360 IVTRAYRQHY RGSYYKATSC LLLLPTIGNP PGKPRSVRPR PSKDKLQAKY GNNVKDNIAG 420 KLGRQNHRPG DADSKVPLQS FLSAKKGFKR PGKIKRGPIL ESVKPQTKLQ AKESTQHNIK 480 VKEDHRIKPV TKERKRARQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 81 | RKRYSGCNAWFEELRKRR |
2 | 207 | 215 | RRGKRRRKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778975.1 | 0.0 | PREDICTED: uncharacterized protein LOC104228236 isoform X1 | ||||
Refseq | XP_016467287.1 | 0.0 | PREDICTED: uncharacterized protein LOC107789922 isoform X1 | ||||
TrEMBL | A0A1S3ZSE7 | 0.0 | A0A1S3ZSE7_TOBAC; uncharacterized protein LOC107789922 isoform X1 | ||||
TrEMBL | A0A1U7WXL3 | 0.0 | A0A1U7WXL3_NICSY; uncharacterized protein LOC104228236 isoform X1 | ||||
STRING | XP_009778975.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5534 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42150.1 | 3e-23 | DNA-binding bromodomain-containing protein |