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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016466833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 408aa MW: 45044.1 Da PI: 5.4997 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.7 | 1.8e-06 | 3 | 44 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ ++e++ + +C+++ +lC +C + H+ H++ XP_016466833.1 3 HICEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44 68*****************************65677777765 PP | |||||||
2 | CCT | 59.9 | 8.5e-21 | 351 | 394 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ XP_016466833.1 351 RSNAVLRYKEKKKIRKFDKHVRYASRKARADVRRRVKGRFVKAG 394 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.3E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.513 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.52E-8 | 4 | 47 | No hit | No description |
Pfam | PF06203 | 3.0E-15 | 351 | 393 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.852 | 351 | 393 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGHICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAVVRR 60 VEEKISLCKN CDSIGHAAGS MHKRQALSCY TGCPSAAELS TIWSFLLDGD STCQKGMGAM 120 SITDNQPRDN EDPQGKYNSQ DMSAAVEMSE LHTSSEKSTT LIESSLPALD NKQNKAELYA 180 GSKNYSSSKG CYSGMKGSTI YEDDPFAQDF NMDEVDLSFE NYEELFSGSL DNPNQFFENE 240 DINGLFGTKD MSVSGSSCQD ADAIEVGSSI RRVMTMQPAC SNAESADSLV SCKTEPSICF 300 ARQASILSFS NLGGESNAGD YQECGASTML LMGEPPWYHP FPETSLPSTS RSNAVLRYKE 360 KKKIRKFDKH VRYASRKARA DVRRRVKGRF VKAGDAYDYD PLNETRSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603731.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_016466833.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-125 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A1S3ZRE8 | 0.0 | A0A1S3ZRE8_TOBAC; zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
STRING | XP_009603731.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-114 | CONSTANS-like 9 |