PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466671.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 714aa    MW: 82426.1 Da    PI: 6.9854
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466671.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.42.8e-2493184190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++ HnHel 
  XP_016466671.1  93 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFSNVHNHELL 184
                     69********************8888.******************************************998766789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-2293184IPR004330FAR1 DNA binding domain
PfamPF105515.9E-24316408IPR018289MULE transposase domain
PROSITE profilePS509669.742588623IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-5596619IPR007527Zinc finger, SWIM-type
SMARTSM005750.0015598625IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MSIYLGSLIL LLSTKITTFS QLIMAAKPLN NIWIRRQQCP CGDWKCYIKA DGDDQAANVS  60
LMTKSETASS SSQDDVFTPY VGQIFKSDDE AFEYYSNFAR KNGFSIRKAR STESQNLGIY  120
RRDFVCYRSG FNQPRKKANV EHPRDRKSVR CGCDAKLYLT KEIVDGVAQW YVSQFSNVHN  180
HELLEDDQVR LLPAYRKIQE ADQERILLLS KAGFPVNRIV KVLELEKGVQ PGQLPFIEKD  240
VRNFVRTCKK TVQENDALIT EKRENDLLEL LEACKASEQK NVGFVYSYTT DENGRVENIA  300
WSYGHSLRAY SLFGDVVTFD TTYRSITYNM VLGVWFGIDN NGNAIFLGCV LLQDETSQSF  360
SWALKSFVRF MRGKQPQTIV TDIDSGLRDA IASEMPNTKH VICIWQVLSK LSSWFSLPLG  420
LQYPDFKSEF DMLCRLENVE DFEHQWNHLV ARFGVGSDKH IALLLSYRTS WPTSYMQNFF  480
LARTMTIEYW KLIETFMKNI LSPQSSLLLF FEQIGLVSNL GNHNKEKRLY MPSKTCLPLE  540
EHARSVLTHY AFNVMQHEIM LSMQYAITEM ANSSYLVRHY KKMEAECLVI WIPEDEQVHC  600
SCKEFEHSGI LCRHSIRMLV SKNYFRIPEK YFPLRWRLES SLAPLDDSVV QSSASEYSQI  660
FHDLSGSLYS ESFISKQRVN YVNRELKQLL EHVQNMPTVD EVAVSSAPIN VSEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466671.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1S3ZQL60.0A0A1S3ZQL6_TOBAC; Uncharacterized protein
STRINGXP_009624952.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]