PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466665.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 425aa    MW: 47376.8 Da    PI: 6.255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-08339379954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  XP_016466665.1 339 ARQRRERISEKIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 379
                     69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-14335392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-13336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-10336384No hitNo description
Gene3DG3DSA:4.10.280.106.7E-12338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5339379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MESLNWDESP VFQEFGDSFD PIHVISNWNM PQRQEAAVRL AADSMAAKSA ADLSRDCVEN  60
GFSSFPILNV PNYISGNNPM ALNDLMSDFS SNDHVQEIKP THKLLSNTCS LESLDCLLSA  120
TTTTNNTDTS IEDDGMSMIF ADNSKSLWNF NSSGESTHNA SSQALKQSPG YQQLLTCPSG  180
HKILEEEERK RKPYKPINGN ELDETVSQSS PNHKYNKRSH NQALENSPSE FNLFDSDSLN  240
GACGNFQLIS EKQAKSKKPR LITESYNKPR PSSSNINFQQ ASSSASSIDQ EPDPEAIAQM  300
KEMIYRAAAF RPVNFGPEAP EKPKRKNVRI STDPQTVAAR QRRERISEKI RVLQRLVPGG  360
SKMDTASMLD EAANYLKFLR SQVKALEAIG QKQDPFSSIP FNYPFPMQLP HFPLQNPNPI  420
HGPKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466664.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_016466665.10.0PREDICTED: transcription factor bHLH87-like
SwissprotQ8S3D29e-78BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A1S3ZQ540.0A0A1S3ZQ54_TOBAC; transcription factor bHLH87-like
STRINGXP_009614250.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.16e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]