PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466499.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 701aa    MW: 76749.8 Da    PI: 6.5969
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466499.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07280300526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd C +aHg
  XP_016466499.1 280 PCPEFRK-GACRRGDMCEYAHG 300
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.3E-2015162IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.55E-1920141IPR020683Ankyrin repeat-containing domain
PfamPF127965.7E-1154128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.46559162IPR020683Ankyrin repeat-containing domain
CDDcd002044.85E-1759141No hitNo description
SMARTSM002480.00315989IPR002110Ankyrin repeat
PROSITE profilePS5008813.11794129IPR002110Ankyrin repeat
SMARTSM002487.0E-494126IPR002110Ankyrin repeat
PRINTSPR014151.7E-595110IPR002110Ankyrin repeat
PRINTSPR014151.7E-5113127IPR002110Ankyrin repeat
SMARTSM002482500130165IPR002110Ankyrin repeat
SMARTSM003569.5E-6275301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981280302IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4280300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035637310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MNMNHLTVET EDTFASLLEF AANNDIEAFK SWMERDISGI HEVGLWYGRQ KGSKQMVLEH  60
RTPLMVAAMY GSVDVLKLIL SLPGVDVNHS CGRDNSTALH FAASGGSLNA VDAVKLLVEA  120
GADPNIKNTN GHRPLDVIVI SPKFHTMTSC LENLLKTDAT EDCNLRVSMA TSSSNSPPLS  180
PSPGNRSPSS ASDTTSSPRS AKSSDLPVPF TSEKKEYPID PSMPDIKNSI YSTDEFRMFS  240
FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT NCDRRVCFFA HTQEELRPLY VSAGSAVPSP RSNTSAANAL  360
DFAAAMGLIP GSPSSVSVMP PSAFTPPMSP SANGISNIGW PQQNVPALHL PGSNLQSSRL  420
RSSLNARDIP AEDLTMLSDF DVQQKQLLYE LSCLSHSSMN ANSFSHSVRP RTLTPSNLED  480
SFSAESSSPR YSDHSLPQAV FSPTHKSIGF NQFQQQQATL SPINTRFSPK TVESPLLQGS  540
FGVPPMRNMS PRGMEPISPM SSRASILAQS DKQQQFRSLS SRDLGSSASA IVGSPADSWS  600
NWGTAMGKPD WAVNTEEFGR LRRSSSFELA NSGEEPDLSW VQSLVKESPQ EVKDESASRV  660
SGLTNPGADI REASTSSSQN GQFDQLGAWM EQMKLDQLVP Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466499.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3ZQB90.0A0A1S3ZQB9_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009781965.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]