PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466302.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 177aa    MW: 19771.1 Da    PI: 10.4003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000394264123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+F++   L  H  +H
  XP_016466302.1 42 FECKTCNKRFPSFQALGGHRASH 64
                    89**********99999998887 PP
2zf-C2H214.40.0001186108123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+ Fs    L  H+r+H
  XP_016466302.1  86 HECSICGMEFSLGQALGGHMRRH 108
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0754264IPR015880Zinc finger, C2H2-like
PfamPF139126.7E-134266IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0344269IPR007087Zinc finger, C2H2
SuperFamilySSF576673.83E-942108No hitNo description
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-483109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.11886113IPR007087Zinc finger, C2H2
SMARTSM003550.06786108IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-986111IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MNAMKRNREE DRQVEAQAMA NCALMLLSRL NDIASSNNHN EFECKTCNKR FPSFQALGGH  60
RASHKRPRLL IGAGDFLVQS KKNKMHECSI CGMEFSLGQA LGGHMRRHRD EINKTSTAAG  120
KTIIPVAGKT MIPVLKKSNS SKRIFCVLDL NLTPDVDVEL KLWPTAPVLS PVLRIFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622961.11e-130PREDICTED: zinc finger protein ZAT8-like
RefseqXP_016466302.11e-130PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9SLD43e-36ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3ZPL61e-129A0A1S3ZPL6_TOBAC; zinc finger protein ZAT8-like
STRINGXP_009622961.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-38C2H2 family protein