PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016466260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 31442.4 Da PI: 4.5573 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13 | 0.0002 | 161 | 207 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +rrR ri ++++ L el P + kK a+ +++++Ik+Lq XP_016466260.1 161 RAALSDRRRKMRIAERIDALGELFPCS-----KKGGRASLMDEVIDHIKNLQ 207 556779********************9.....7888899999********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.59E-7 | 155 | 211 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-7 | 155 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-9 | 156 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.909 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MGEQSQPNAL ETQWAFLGGT NDSYYLAGHE LNKQYMAGVG IDGMHYVSVP SPQWIHDQQT 60 PQNYVEYLAE NVVSEVQVDA SAEASGFRVV DSSADIISQE QIRYPSPYFE GVPLDFLIGS 120 ESQVGALTWE PAGDARLASG PCSEALAAGS SYLSKSSRKA RAALSDRRRK MRIAERIDAL 180 GELFPCSKKG GRASLMDEVI DHIKNLQFQI KDLSWSRLGG EPSSIPFLFV EGCGHYILDE 240 QLIEPLEETL GKLLEVNPSM ATQLLENKGL FFMPMTLAEG MHHHE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 5e-91 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016466260.1 | 0.0 | PREDICTED: transcription factor bHLH69-like isoform X1 | ||||
Refseq | XP_016466261.1 | 0.0 | PREDICTED: transcription factor bHLH69-like isoform X1 | ||||
TrEMBL | A0A1S3ZPF3 | 0.0 | A0A1S3ZPF3_TOBAC; transcription factor bHLH69-like isoform X1 | ||||
STRING | XP_009594402.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9646 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30980.1 | 4e-17 | LJRHL1-like 2 |