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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016466095.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 23447.7 Da PI: 8.7157 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 108.9 | 3.8e-34 | 11 | 105 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++r+kCa+ C+lapyfpae++++f++vhk+FG+snv kl+k+l ee+r++a++slv+eA +r+++Pv G++g ++++ ++l+ k++ + XP_016466095.1 11 ACASCKHQRKKCANTCILAPYFPAEKSREFQAVHKIFGVSNVAKLIKTLIEEDRKKAADSLVWEAFCRQKNPVLGSYGEYRRVVEELKLYKSQYQ 105 7***********************************************************************************99999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.537 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-32 | 11 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MQKINGRDTA ACASCKHQRK KCANTCILAP YFPAEKSREF QAVHKIFGVS NVAKLIKTLI 60 EEDRKKAADS LVWEAFCRQK NPVLGSYGEY RRVVEELKLY KSQYQQILQI PTQGATHDMM 120 YNAAQGLNNG YNKKANSMME SWLCSNNIHL QHVQNNMEKL TSDCNGSTII VPQQAIDGFT 180 NHYYLTAGNC NPIDVKRMEN SSWEASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-20 | 10 | 88 | 10 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-20 | 10 | 88 | 10 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790364.1 | 1e-157 | PREDICTED: LOB domain-containing protein 27-like | ||||
Refseq | XP_016466095.1 | 1e-157 | PREDICTED: LOB domain-containing protein 27-like | ||||
TrEMBL | A0A1S3ZNI0 | 1e-156 | A0A1S3ZNI0_TOBAC; LOB domain-containing protein 27-like | ||||
TrEMBL | A0A1U7XTY2 | 1e-156 | A0A1U7XTY2_NICSY; LOB domain-containing protein 27-like | ||||
STRING | XP_009790364.1 | 1e-156 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10177 | 18 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 4e-50 | LOB domain-containing protein 2 |