PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016465978.1
Common NameNtl1-Nt7
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 305aa    MW: 33459.3 Da    PI: 9.0351
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016465978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.5e-20202235134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C++tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_016465978.1 202 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGR 235
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.9E-15196246IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.767196232IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-14201233IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.59E-16201248No hitNo description
SuperFamilySSF577165.7E-15201259No hitNo description
PfamPF003201.1E-17202235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440202227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MMTMVGHCGY LDGIPTGPVV DEDFDDILNF LDFPLESLEE DGQGVEWDAS ESKFLGPIPT  60
DALMAFPPVP QGNIGNSRVK AEPNSNHPIK VTEGQGSGIF QTQSPVSVLE SSNSCSGGKS  120
ISIKHDIAIP VRPRSKRPRS SALNPWILMP PISATRFASK KTCDARKGKE KKRKMSLLSV  180
PQIADVTKKK TTSTQQSSFK KCTHCQVTKT PQWREGPLGP KTLCNACGVR YRSGRLFPEY  240
RPAASPTFVP TLHSNSHRKV VEMRKKALYG ETSALEEPHS VIVEGPPMSP APEFVPMSSY  300
LFDVY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX731110.0X73111.1 Nicotiana tabacum mRNA for GATA-1 zinc finger protein (Ntl1-Nt7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621794.10.0PREDICTED: GATA transcription factor 11-like isoform X2
RefseqXP_016465978.10.0PREDICTED: GATA transcription factor 11-like isoform X2
TrEMBLA0A1S3ZNZ20.0A0A1S3ZNZ2_TOBAC; GATA transcription factor 11-like isoform X2
STRINGXP_009621793.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-38GATA transcription factor 11
Publications ? help Back to Top
  1. Daniel-Vedele F,Caboche M
    A tobacco cDNA clone encoding a GATA-1 zinc finger protein homologous to regulators of nitrogen metabolism in fungi.
    Mol. Gen. Genet., 1993. 240(3): p. 365-73
    [PMID:8413186]