PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016465864.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 508aa    MW: 57834.3 Da    PI: 6.7314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016465864.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012442464123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C++ F++   L  H r+H
  XP_016465864.1 442 HECPFCDRIFKSGQALGGHKRSH 464
                     78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355120931IPR015880Zinc finger, C2H2-like
PfamPF139120.018931IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556101128IPR007087Zinc finger, C2H2
SMARTSM003550.21101123IPR015880Zinc finger, C2H2-like
PfamPF139126.3E-8102125IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576674.09E-7367391No hitNo description
SMARTSM003554.2369391IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764369396IPR007087Zinc finger, C2H2
PfamPF139122.5E-8369393IPR007087Zinc finger, C2H2
PROSITE patternPS000280371391IPR007087Zinc finger, C2H2
SuperFamilySSF576674.09E-7437464No hitNo description
SMARTSM003550.034442464IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245442464IPR007087Zinc finger, C2H2
PfamPF139129.5E-9442464IPR007087Zinc finger, C2H2
PROSITE patternPS000280444464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEEDQDLKFV CKLCNKKYPC GKSLGGYMRS HVLTNSAELD EKIEPQLEKL QSWNSGVKDS  60
NKENQHQSKF ELGGNSGYGL RENPKKSWRA VDSTSPLPQE KICQQCGKVF QSLKALCGHM  120
ACHSEKDKGT SYSDTEVEEE LRLRTRSKTK RYKRIVVKSS VCLVNDNTIN NGSSCVSEID  180
NEQDQEEVAK CLMMLSKDSW NCVTSFVESS DNNSVVLETK SSSTDMKFAR KDGLRCDYNQ  240
EETPQTKKKE DSNLKLSVLD VEVESENSDS AYFLDENTIV ESDVSFDGLH RNGNSKWSTS  300
KMSDTVWCDE SWIDKEKGLN RTKRYPTESG SEYDDYRIAS YFDKCESRKR TKNSSYRLEL  360
ENESFKKKYE CMNCKKTFSS YQALGGHRPC HKKTNAYIES INGTGENSVD AADRDDKHRE  420
TFSSRKPASA EKKIKPKKFK GHECPFCDRI FKSGQALGGH KRSHFIVGTS QNMHQSSPVK  480
KDVDDLLDLN LPAPVEDEDD EHAHLVSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465864.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1S3ZNJ10.0A0A1S3ZNJ1_TOBAC; zinc finger protein ZAT4-like
STRINGXP_009775816.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-66C2H2-like zinc finger protein