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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016465747.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 357aa MW: 39078.3 Da PI: 5.0651 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.6e-19 | 144 | 194 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g XP_016465747.1 144 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 194 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.87E-31 | 144 | 202 | No hit | No description |
SMART | SM00380 | 1.8E-37 | 145 | 208 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-21 | 145 | 202 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.63 | 145 | 202 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-30 | 145 | 202 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-12 | 145 | 194 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 146 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 168 | 184 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDQQTMLSSR VKYTEHRKQT TMVKPSAPAT VTGRRKCPEM NAANGGPRVV RITVTDADAT 60 DSSSDEGEGL YGRHRVKKFV NEVRIEPCMG ETVKTNSSGN GSVTGVLRNG PSENPAAPKR 120 RKKNAGAIKA ESTAARGLKA NNVKKFRGVR QRPWGKWAAE IRDPLRRVRL WLGTYDTAEE 180 AAMVYDHAAI QLRGPDALTN FATPPAAKTT SCSSGYNSGG ESHNVQRSPK SVLRCASTSF 240 EESQNNEEAE AESIPSLPSE SAQKNSDFRD ENDISNFCEF PPFESLFPDD LFLFENPVPI 300 PDLFEPAALP DNIFGETCSD MFIGSSNDFG FGSSSWPEDD YFQDIGDIFG SDPLMAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-19 | 144 | 201 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-19 | 144 | 201 | 4 | 62 | ATERF1 |
3gcc_A | 4e-19 | 144 | 201 | 4 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016465747.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A1S3ZN11 | 0.0 | A0A1S3ZN11_TOBAC; ethylene-responsive transcription factor CRF1-like | ||||
STRING | XP_009603046.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 4e-52 | cytokinin response factor 2 |