PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016465747.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 357aa    MW: 39078.3 Da    PI: 5.0651
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016465747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19144194155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  XP_016465747.1 144 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 194
                     59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-31144202No hitNo description
SMARTSM003801.8E-37145208IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21145202IPR016177DNA-binding domain
PROSITE profilePS5103223.63145202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-30145202IPR001471AP2/ERF domain
PfamPF008474.8E-12145194IPR001471AP2/ERF domain
PRINTSPR003674.0E-10146157IPR001471AP2/ERF domain
PRINTSPR003674.0E-10168184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDQQTMLSSR VKYTEHRKQT TMVKPSAPAT VTGRRKCPEM NAANGGPRVV RITVTDADAT  60
DSSSDEGEGL YGRHRVKKFV NEVRIEPCMG ETVKTNSSGN GSVTGVLRNG PSENPAAPKR  120
RKKNAGAIKA ESTAARGLKA NNVKKFRGVR QRPWGKWAAE IRDPLRRVRL WLGTYDTAEE  180
AAMVYDHAAI QLRGPDALTN FATPPAAKTT SCSSGYNSGG ESHNVQRSPK SVLRCASTSF  240
EESQNNEEAE AESIPSLPSE SAQKNSDFRD ENDISNFCEF PPFESLFPDD LFLFENPVPI  300
PDLFEPAALP DNIFGETCSD MFIGSSNDFG FGSSSWPEDD YFQDIGDIFG SDPLMAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-19144201159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-19144201462ATERF1
3gcc_A4e-19144201462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465747.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A1S3ZN110.0A0A1S3ZN11_TOBAC; ethylene-responsive transcription factor CRF1-like
STRINGXP_009603046.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-52cytokinin response factor 2