PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 387aa MW: 42843.2 Da PI: 4.4306

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016465672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	5.9e-19	116	165	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g XP_016465672.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 165 69*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.1E-36	116	179	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.105	116	173	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-32	116	175	IPR001471	AP2/ERF domain
CDD	cd00018	3.20E-33	116	174	No hit	No description
SuperFamily	SSF54171	2.68E-22	116	175	IPR016177	DNA-binding domain
PRINTS	PR00367	1.2E-11	117	128	IPR001471	AP2/ERF domain
Pfam	PF00847	9.3E-12	117	165	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	139	155	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0070483	Biological Process	detection of hypoxia
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MCGGAIISDY IAPSRTSRRL TAELLWGRSD LSNKQKNPNN YHSKPLRSQV VDLDDDFEAD 60 FQDFKDFSDD EDVQVDVKPF AFSASKNSNV EGSKSVKTDD SDKDADRSSK RKRKNQYRGI 120 RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDVEA RRIRGNKAKV NFPDEAPVPA 180 SRRTVKVNPQ KVLPKEILDS VQPDSTIINN MEDCCYDSLG FLEEKPMTKQ FGCEDGSSAS 240 GDTGFGSFAP SAGTDIYFNS DVGSNSFDCS DFGWGEPCAR TPEISSVLSA VIESNESQLV 300 EDDTSPMKKL KSSPINPVAD DGNTANKLSE ELSAFETQMK FLQIPYLEGN WDASVDTFLN 360 SSATQDGDNA MDLWSFDDVP SLLGGVF

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MCGGAIISDY IAPSRTSRRL TAELLWGRSD LSNKQKNPNN YHSKPLRSQV VDLDDDFEAD  60
FQDFKDFSDD EDVQVDVKPF AFSASKNSNV EGSKSVKTDD SDKDADRSSK RKRKNQYRGI  120
RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDVEA RRIRGNKAKV NFPDEAPVPA  180
SRRTVKVNPQ KVLPKEILDS VQPDSTIINN MEDCCYDSLG FLEEKPMTKQ FGCEDGSSAS  240
GDTGFGSFAP SAGTDIYFNS DVGSNSFDCS DFGWGEPCAR TPEISSVLSA VIESNESQLV  300
EDDTSPMKKL KSSPINPVAD DGNTANKLSE ELSAFETQMK FLQIPYLEGN WDASVDTFLN  360
SSATQDGDNA MDLWSFDDVP SLLGGVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	8e-22	116	173	2	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00204	DAP	Transfer from AT1G53910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY286010	0.0	AY286010.1 Nicotiana tabacum callus-expressing factor (CEF1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312385.1	0.0	ethylene-responsive transcription factor RAP2-12-like
Refseq	XP_016465672.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBL	Q7Y1W2	0.0	Q7Y1W2_TOBAC; Callus-expressing factor
STRING	XP_009775920.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1446	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53910.3	1e-61	related to AP2 12

Link Out ? help Back to Top
Entrez Gene	107788512

Publications ? help Back to Top
Lee JH, et al. Functional characterization of NtCEF1, an AP2/EREBP-type transcriptional activator highly expressed in tobacco callus. Planta, 2005. 222(2): p. 211-24 [PMID:15918028]