 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016465653.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
RAV |
| Protein Properties |
Length: 364aa MW: 41378.3 Da PI: 8.9337 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016465653.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 41.3 | 3.9e-13 | 59 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g
XP_016465653.1 59 SRFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNDEDEAAKAYDIAAQRFRG 107
689***9788.8*********3.....5**********99*************98 PP
|
| 2 | B3 | 99.7 | 1.7e-31 | 189 | 284 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
f+k+ tpsdv+k++rlv+pk++ae++ + ++ +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F +++ +++l
XP_016465653.1 189 FEKAVTPSDVGKLNRLVIPKQHAERYfplE-NNSKGMLLNLEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVCFGRSNGVDKKL 282
89*************************964.45689*************************************************9876666666 PP
EE CS
B3 93 vv 94
++
XP_016465653.1 283 YI 284
65 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MDGSCCIEQE STTSDSLSFA QALISTRLSR MGSGTSCVII DAELNCSIEA ESNKKLASSR 60
FKGVVPQPNG RWGAQIYEKH QRIWLGTFND EDEAAKAYDI AAQRFRGKDA VTNFKPLCDS 120
DKVEIEISFL NARSKAEIVD MLRKHTYNDE LEHSKKVYSF DKNDKRGCEN ALVNSFDVEN 180
MSKARELMFE KAVTPSDVGK LNRLVIPKQH AERYFPLENN SKGMLLNLED MNGKVWRFRY 240
SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV CFGRSNGVDK KLYIDLKARI SSTITPILDK 300
IQVQVQVQPV KMVRLFGVNI CKVQDVNNIV VENNMSSCSG GKRTREMELL AFECRKKQRV 360
IDVL
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
Mol Plant, 2014. 7(5): p. 792-813
[PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants.
Sci Rep, 2014. 4: p. 3704
[PMID:24424565] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039]
|
