PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016465628.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 339aa    MW: 37273.6 Da    PI: 6.5017
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016465628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.5e-18233266134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y+k +
  XP_016465628.1 233 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKKGR 266
                     99******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.1E-701317IPR016679Transcription factor, GATA, plant
SMARTSM004012.9E-15227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.279227263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.0E-15231265IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.23E-15231290No hitNo description
CDDcd002023.35E-13232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003208.1E-16233267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASNLVDEID CASFFDHIDD LVEFSPENEC GDLDSTDCKN FPSICNDPLP DSGPLFFSSH  60
RNSPSDFSAE LLVPYEDIVQ LEWLSTFVED SFSCGGLTMG KEHFPVNKEP SHSKFLSSSP  120
VSVLESSSSS SSSSGAGKTT PPLSPCHRGT QRARSKRPRP ATFNPWPVSQ LMSPTSSFTE  180
IHQQFVAPED TLESDNFGES HMKKKKRIKF SIPLAPVDTN QNCQRALQTV RKCMHCEITK  240
TPQWRAGPMG PKTLCNACGV RYKKGRLFPE YRPAAAPTFV PSLHSNSHKK VLEMRSNLIP  300
EDTHDKQAAP HSTRPLSPGP PESNATGGTS TAQSDFNPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605437.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016465627.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016465628.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1S3ZMP00.0A0A1S3ZMP0_TOBAC; GATA transcription factor
STRINGXP_009605437.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-42GATA transcription factor 9