PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016465187.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 377aa MW: 43326.1 Da PI: 8.857

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016465187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.6	1.2e-39	131	251	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikel ++ +++ e ++s ++++++ +++++ XP_016465187.1 131 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKNAIKELSRN--IPQ-EI----NNSIGDQNNI---MSESHI 215 79************************************************************..444.11....1111221122...222222 PP TCP 97 skksqksaasalnlak.esrakarararertrekmriknkl 136 + + +++l k e ++k ra+are+t+ km+ik ++ XP_016465187.1 216 ---L--ECEDHRKLRKmELKEKPRAKARENTKGKMMIKGHK 251 ...2..222235566667788889999999***999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.5E-39	131	262	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	37.361	133	191	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MFPKSNINDP FSYSSQELLK HSYTHDAYHQ NPSSTSIIVE DHPFFLNNFP SPFLDEHESP 60 LSQIFSHQQQ QQQQELEASD HYHDTEGDPN TSRFGRANVK IIEDQSSNPS AEHVSPSSKK 120 RKLSAKPRRR TGKKDRHSKI CTAQGVRDRR MRLSLQIARK FFDLQDMLGF DKASKTIEWL 180 FSKSKNAIKE LSRNIPQEIN NSIGDQNNIM SESHILECED HRKLRKMELK EKPRAKAREN 240 TKGKMMIKGH KKGKEMYEAN PKNVNKLGSN SQSLENKFAN VGIMESYLGG TSSSISSIFD 300 YQNSGVRGGN IDYFDNCYMG FLENWDNKNS NISCSTTTTN EVQIPFAGNN NTSSIYLDNS 360 RYQFQFLDQE NHFSCRH

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MFPKSNINDP FSYSSQELLK HSYTHDAYHQ NPSSTSIIVE DHPFFLNNFP SPFLDEHESP  60
LSQIFSHQQQ QQQQELEASD HYHDTEGDPN TSRFGRANVK IIEDQSSNPS AEHVSPSSKK  120
RKLSAKPRRR TGKKDRHSKI CTAQGVRDRR MRLSLQIARK FFDLQDMLGF DKASKTIEWL  180
FSKSKNAIKE LSRNIPQEIN NSIGDQNNIM SESHILECED HRKLRKMELK EKPRAKAREN  240
TKGKMMIKGH KKGKEMYEAN PKNVNKLGSN SQSLENKFAN VGIMESYLGG TSSSISSIFD  300
YQNSGVRGGN IDYFDNCYMG FLENWDNKNS NISCSTTTTN EVQIPFAGNN NTSSIYLDNS  360
RYQFQFLDQE NHFSCRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	129	KRKLSAKPRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-95	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760495.1	0.0	PREDICTED: transcription factor TCP24-like
Refseq	XP_016465187.1	0.0	PREDICTED: transcription factor TCP24-like
TrEMBL	A0A1S3ZLF7	0.0	A0A1S3ZLF7_TOBAC; transcription factor TCP24-like
TrEMBL	A0A1U7VF75	0.0	A0A1U7VF75_NICSY; transcription factor TCP24-like
STRING	XP_009760495.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-32	TCP domain protein 12