PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464898.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 202aa    MW: 22749.6 Da    PI: 10.0699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464898.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-0690112123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_016464898.1  90 FVCEICNKGFQRDQNLQLHRRGH 112
                     89*******************88 PP
2zf-C2H217.21.4e-05166188123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H++t+
  XP_016464898.1 166 WKCDKCSKKYAVQSDWKAHQKTC 188
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-689112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-889112No hitNo description
PROSITE profilePS5015710.94990112IPR007087Zinc finger, C2H2
PfamPF121712.5E-590112IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01790112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM0035577131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-6154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-8161187No hitNo description
SMARTSM0035594166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSNISGEEGS FSSGNTGDEE VQKHNQVAAA HLKTSNNISS ITNGSSSQSQ QQQNKQQPLA  60
KKKRNLPGTP DPNAEVIGLS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ  120
RTTTEVRKRV YICPEPTCVH HDPARALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD  180
WKAHQKTCGT REYKCDCGTI FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-22162202343Zinc finger protein JACKDAW
5b3h_F8e-22162202343Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-129HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798721.11e-152PREDICTED: zinc finger protein NUTCRACKER-like, partial
RefseqXP_016464898.11e-152PREDICTED: protein indeterminate-domain 2-like, partial
SwissprotQ9LVQ75e-95IDD1_ARATH; Zinc finger protein ENHYDROUS
SwissprotQ9SCQ64e-95IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1S3ZKW71e-150A0A1S3ZKW7_TOBAC; protein indeterminate-domain 2-like
TrEMBLA0A1U7Y9V51e-150A0A1U7Y9V5_NICSY; zinc finger protein NUTCRACKER-like
STRINGXP_009798721.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-84C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]