PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_016464877.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 697aa MW: 76591.8 Da PI: 6.9605

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016464877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.6e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg XP_016464877.1 280 PCPEFRK-GACQRGDMCEYAHG 300 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	9.02E-15	17	139	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.5E-9	53	128	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.9E-16	59	139	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.12	59	89	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	15.353	59	134	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.47E-13	59	134	No hit	No description
PROSITE profile	PS50088	12.048	94	129	IPR002110	Ankyrin repeat
SMART	SM00248	1.7E-4	94	126	IPR002110	Ankyrin repeat
SMART	SM00356	2.0E-5	275	301	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.2E-5	280	300	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.568	280	302	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	308	338	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	39	310	333	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MNMNHLTVET EDSFVSLLEL AANNDIVAFK RLMEHDLSGI HEVGLWYGRQ KGSRQMVLEH 60 RTPLLVAATY GSIDVLKLIL SLPEVDVNQS CGRDKSTALH CAASGGSRNA VDAVKMLLEA 120 GADPNSEDAN GHRPQDVIVV SPKFHSTETS LESLLKSDTT GKCSLRLSTA TSNSNSPPLS 180 PSPGNRSPSS TSDSTSSPKS AKSDDLPVSS ASEKKEYPID PSLPDIKNSI YSTDEFRMFS 240 FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT KCNRRVCFFA HTQEELRPLY VSTGSAVPSP RSNTSAANAM 360 DFAAAMGLIP GSPSSVRVMS PLPFTPPMSP SANGVSNMSW PQPNVPALHL PCSNFQSSRL 420 RSSLHARDIR AEDLNFDMQQ QQQFINEFPC LSQSSVNANS LNRLAHPKTL TPSNLEDLFS 480 AESPRYSDQA LAQAVFSPTH KSAVLNQFQQ PQQSMLSPIN TKFSPKNVDN PLLQASFGVQ 540 TPGRMSPRGM EPISPMSSRV STLSQREKQQ QFRSLSSRDL GSIASAVVGS PVDTWSKWGS 600 STGNADWAVT TEEFGRLKRS SSFELANNGE EPDISWVQSL VKESPQELKD KAASRVLGLA 660 GSTADLAEDS TSNSQIEQFD QLNAWMEQMK LDKLMAQ

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MNMNHLTVET EDSFVSLLEL AANNDIVAFK RLMEHDLSGI HEVGLWYGRQ KGSRQMVLEH  60
RTPLLVAATY GSIDVLKLIL SLPEVDVNQS CGRDKSTALH CAASGGSRNA VDAVKMLLEA  120
GADPNSEDAN GHRPQDVIVV SPKFHSTETS LESLLKSDTT GKCSLRLSTA TSNSNSPPLS  180
PSPGNRSPSS TSDSTSSPKS AKSDDLPVSS ASEKKEYPID PSLPDIKNSI YSTDEFRMFS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT KCNRRVCFFA HTQEELRPLY VSTGSAVPSP RSNTSAANAM  360
DFAAAMGLIP GSPSSVRVMS PLPFTPPMSP SANGVSNMSW PQPNVPALHL PCSNFQSSRL  420
RSSLHARDIR AEDLNFDMQQ QQQFINEFPC LSQSSVNANS LNRLAHPKTL TPSNLEDLFS  480
AESPRYSDQA LAQAVFSPTH KSAVLNQFQQ PQQSMLSPIN TKFSPKNVDN PLLQASFGVQ  540
TPGRMSPRGM EPISPMSSRV STLSQREKQQ QFRSLSSRDL GSIASAVVGS PVDTWSKWGS  600
STGNADWAVT TEEFGRLKRS SSFELANNGE EPDISWVQSL VKESPQELKD KAASRVLGLA  660
GSTADLAEDS TSNSQIEQFD QLNAWMEQMK LDKLMAQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618285.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_009618286.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_016464875.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016464876.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016464877.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_018631218.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_018631219.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1S3ZKG8	0.0	A0A1S3ZKG8_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRING	XP_009618285.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]