PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016464337.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 346aa MW: 38910.7 Da PI: 6.2687 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.6 | 4.7e-27 | 131 | 191 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ gs +pr+YYrCt++ gC ++k+v+rs + +++e+tY+g+H ++ XP_016464337.1 131 DDGYSWRKYGQKDILGSIHPRAYYRCTHRntqGCLATKQVQRSVGNSSTFEVTYKGRHSCK 191 8***************************98889*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-26 | 120 | 192 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.227 | 125 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-25 | 129 | 192 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-38 | 130 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-24 | 131 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEKVKALEKK KLITELTQGR EFVNQLKKQI GPLASPEECD LLLGKILSSL EKSLSILNLK 60 ALLFEGGNAN STSSCSSISF LGNNNSPKSE VLDSSKDQLV GQNVFSKKRK TPEQWSKQVS 120 ISGTGLESQH DDGYSWRKYG QKDILGSIHP RAYYRCTHRN TQGCLATKQV QRSVGNSSTF 180 EVTYKGRHSC KIAQSEIFSL VTQKRQKHNK KQELGYQRQE QEMVIFNSGP NHKVENFSLT 240 KEEVFTPFSF PPTPLNLENI EETQFFSNSM VPFSPPITSE LSSYLSLLTN QIEEFAMDNI 300 LQSSESDVTE LISTPTSISN SPFDGDWDLS VGFEPSVTFD IEEFFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-19 | 131 | 191 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ808755 | 0.0 | KJ808755.1 Nicotiana tabacum WRKY transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628746.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
Refseq | XP_016464337.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
TrEMBL | A0A1S3ZJ62 | 0.0 | A0A1S3ZJ62_TOBAC; probable WRKY transcription factor 41 | ||||
STRING | XP_009628746.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5553 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 2e-35 | WRKY family protein |