PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464196.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 308aa    MW: 34967.8 Da    PI: 5.692
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-1792145356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_016464196.1  92 KKRRLNLEQVKALERSFEVANKLEPERKVQLARALGLQPRQIAIWFQNRRARWK 145
                     4557899**********************************************9 PP
2HD-ZIP_I/II129.11.7e-4191183193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eqvk+LE+sFe  +kLeperKv+lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye Lkr+yd lk +n++L++++++L++el++
  XP_016464196.1  91 EKKRRLNLEQVKALERSFEVANKLEPERKVQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEILKRQYDVLKFDNDALKTQNKNLHSELQA 183
                     69***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1887149IPR009057Homeodomain-like
SMARTSM003891.0E-1690151IPR001356Homeobox domain
PROSITE profilePS5007116.47191147IPR001356Homeobox domain
PfamPF000467.6E-1592145IPR001356Homeobox domain
CDDcd000866.53E-1692148No hitNo description
Gene3DG3DSA:1.10.10.602.1E-1894154IPR009057Homeodomain-like
PRINTSPR000311.3E-5118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5127143IPR000047Helix-turn-helix motif
PfamPF021833.0E-15147185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MLSGTTGIMA FVPSTPEISI NFQDNHIPST SPKVFPSPCN IPHQDFNGIS SMLMRRSMSF  60
SGVERCDNHQ DLRVDDSEMS DDDGSSQLLG EKKRRLNLEQ VKALERSFEV ANKLEPERKV  120
QLARALGLQP RQIAIWFQNR RARWKTKQLE RDYEILKRQY DVLKFDNDAL KTQNKNLHSE  180
LQALTLRNRE SGGGGAPMIN LNKENEGSWS NGSEENNSID VNIGTTTTTR TSSGDSPFYS  240
NNNKNNVFPE SSPIPLAQLF HQSSSRSDLQ CHKIDPTVPD DQGFCNMFAT PVDDQTNFWP  300
WPEQQQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464196.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X1
TrEMBLA0A1S3ZIL50.0A0A1S3ZIL5_TOBAC; homeobox-leucine zipper protein ATHB-13-like isoform X1
STRINGXP_009783877.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-58HD-ZIP family protein