PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463850.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 650aa    MW: 73633 Da    PI: 6.6353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.22e-20515611295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpk+ ae+h  +++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +Fv+angL+egDf+v++   + +++
  XP_016463850.1 515 QKVLKQSDVGNLGRIVLPKREAETHlpQLESRDGISIAVEDvGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIYA--DmKCG 606
                     79*************************999999********7788*******99777777777777.********************5..44888 PP

                     ..EEE CS
              B3  91 elvvk 95 
                     +++++
  XP_016463850.1 607 KYLIR 611
                     77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-27508619IPR015300DNA-binding pseudobarrel domain
CDDcd100151.41E-32512613No hitNo description
SuperFamilySSF1019364.71E-22513607IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.771514616IPR003340B3 DNA binding domain
SMARTSM010193.4E-19514616IPR003340B3 DNA binding domain
PfamPF023621.0E-16515610IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MKRELQQLYG NNNQEMHGFE NINMVTVDDD IQRQQQQPTD FDPMDDTDIW LNNGNEEQRH  60
FNVNDNNYIN FSTDFPPLPD FPCMSSSSST SNSPPTDSLS FHKKIQFDNT INGDQDCLNV  120
IENLGYMDLI DGNHKFLDPM NSFSQSENPE KHQQHQQQQQ QGEVQFENEQ LSIFQGDSEL  180
ALMFFEWLKQ IKDYISAEDM RSIKLKRSTI ESASKRLGST KEGKKQLLRL ILDWVEQHRL  240
QKKQMSEAAA NQESFQISAP NSNFHYNTVA ADPNACFYQS PWMATAAYNI PNFPDSASVM  300
AGQIPGYIGD PYTNGSLFVP PFNQTMSGSA SSPASTEYQP MDYTRSWSPS QFAVAAASQY  360
NKFPDYSDSA NNVAVVDQPQ SLFGTQYPYQ LLDGNGERLA RLGSKEARKN RMARQRRLPV  420
HHYRHQVQNQ RQINDQSVMI GENSAIDTGN SPGNWIYWPP TAAAASPMVM VPPADSPQSY  480
STERPALRSQ NHQKHSLADK RQACKTEKNL KFLLQKVLKQ SDVGNLGRIV LPKREAETHL  540
PQLESRDGIS IAVEDVGTSR VWNMKYRFWP NNKSRMYLLE NTGDFVRANG LQEGDFIVIY  600
ADMKCGKYLI RGVKVRQSGP ESEGKKPAKK NIRNLSSTAA ISSPVAQAVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-365106231111B3 domain-containing transcription factor FUS3
6j9b_D2e-365106231111B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463850.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like
TrEMBLA0A1S3ZHC70.0A0A1S3ZHC7_TOBAC; B3 domain-containing transcription factor ABI3-like
STRINGXP_009799315.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-119B3 family protein