PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463820.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 491aa    MW: 54167.9 Da    PI: 9.6477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000146888323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++C+k F r  nL+ H r H
  XP_016463820.1 68 CEICNKGFQRDQNLQLHRRGH 88
                    *******************88 PP
2zf-C2H2140.00015143165123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_016463820.1 143 WKCEKCSKKYAVQSDWKAHTKTC 165
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-76588No hitNo description
PROSITE profilePS5015710.8246688IPR007087Zinc finger, C2H2
SMARTSM003550.116688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035583108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-7138163No hitNo description
SMARTSM00355130143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MMSGDVFSIP SSVKGVVLPH HPQDVLLEPN PNPKANSSSK KRRNLPDPDA EVIALSPKTL  60
MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNKQ EIVKKKVYIC PEKTCVHNDP  120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HTKTCGTREY KCDCGTLFSR  180
KDSFITHRAF CDALAEESAR ITSVGTNNLN FNQQPNLVGG ISQIGTGFVQ DFSGMTSGNS  240
LHHQQQKPRL SLWLNQVNNN SQLNNPLHMS TPSSNLFASS SSTGLPDHMV QMQSPNNIFG  300
NQMQWAIDKN VAATTPATSM TETLSSMYSD NQNQHPKSST PMSATALLQK AAQIGSTKSS  360
PTFFTNTFGV MNSSSSSSNT QIFNTLSQTT SEMHQVFAKQ SEDYNPTDNG LINGCPNMSS  420
SANTKAINLD QAFMQTVGMQ TQAVSFNLDN SLTRDFLGMG NEGGRPFLPQ ELAKFASMTS  480
AMGLSHYSSG H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-38139208372Zinc finger protein JACKDAW
5b3h_F1e-38139208372Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7183041e-167AJ718304.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT41-2-420, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781292.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
RefseqXP_016463820.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
TrEMBLA0A1S3ZH970.0A0A1S3ZH97_TOBAC; zinc finger protein JACKDAW-like isoform X2
TrEMBLA0A1U7WMW10.0A0A1U7WMW1_NICSY; zinc finger protein JACKDAW-like isoform X2
STRINGXP_009781290.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-105C2H2-like zinc finger protein