PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463819.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 494aa    MW: 54423.2 Da    PI: 9.6477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000147191323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++C+k F r  nL+ H r H
  XP_016463819.1 71 CEICNKGFQRDQNLQLHRRGH 91
                    *******************88 PP
2zf-C2H2140.00015146168123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_016463819.1 146 WKCEKCSKKYAVQSDWKAHTKTC 168
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-76891No hitNo description
Gene3DG3DSA:3.30.160.602.3E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8246991IPR007087Zinc finger, C2H2
SMARTSM003550.116991IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM0035583111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.56E-7141166No hitNo description
SMARTSM00355130146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MMSGDVFSIP SSVKGVVLPH HPQDVLLEPN PNPKANSSSK KRRNLPGTPD PDAEVIALSP  60
KTLMATNRFL CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKQEIVKKKV YICPEKTCVH  120
NDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHTKTCGT REYKCDCGTL  180
FSRKDSFITH RAFCDALAEE SARITSVGTN NLNFNQQPNL VGGISQIGTG FVQDFSGMTS  240
GNSLHHQQQK PRLSLWLNQV NNNSQLNNPL HMSTPSSNLF ASSSSTGLPD HMVQMQSPNN  300
IFGNQMQWAI DKNVAATTPA TSMTETLSSM YSDNQNQHPK SSTPMSATAL LQKAAQIGST  360
KSSPTFFTNT FGVMNSSSSS SNTQIFNTLS QTTSEMHQVF AKQSEDYNPT DNGLINGCPN  420
MSSSANTKAI NLDQAFMQTV GMQTQAVSFN LDNSLTRDFL GMGNEGGRPF LPQELAKFAS  480
MTSAMGLSHY SSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-38142211372Zinc finger protein JACKDAW
5b3h_F1e-38142211372Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7183041e-167AJ718304.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT41-2-420, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781290.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_016463819.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
TrEMBLA0A1S3ZHG70.0A0A1S3ZHG7_TOBAC; zinc finger protein JACKDAW-like isoform X1
TrEMBLA0A1U7X4880.0A0A1U7X488_NICSY; zinc finger protein JACKDAW-like isoform X1
STRINGXP_009781290.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-110C2H2-like zinc finger protein