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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016463704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | BES1 | ||||||||
Protein Properties | Length: 664aa MW: 75171.6 Da PI: 6.3694 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 153 | 2.2e-47 | 55 | 199 | 3 | 144 |
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq 95 + rk+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+ve+DGttyr++ + ++a+ +g + +s+e +++ XP_016463704.1 55 KSRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPVRADMNDVLAALARQAGWTVEPDGTTYRQSPPTTtnNNASNMGPYQVMSVECPVS 149 789*****************************************************************9877667678889999999******** PP DUF822 96 .sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvls 144 ssl+++++++ v+ ++p+ ++++sp+s+dsi ++++ + ++ +s XP_016463704.1 150 gSSLRNCSTRASVDCHPSVPRINESLSPASFDSIVVTESDTKADKFTCTS 199 ***********************************998844443333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 5.1E-49 | 55 | 203 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 3.21E-157 | 226 | 658 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.5E-170 | 228 | 657 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 1.2E-81 | 249 | 620 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-53 | 265 | 279 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-53 | 286 | 304 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-53 | 308 | 329 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-53 | 401 | 423 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-53 | 474 | 493 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-53 | 508 | 524 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-53 | 525 | 536 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-53 | 543 | 566 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.3E-53 | 579 | 601 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MNNHIPHHPI PNTQDPDPQF PNPNEDPNPN PPPQPQPRRP RGFAATNTAA GVTNKSRKER 60 EKEKERTKLR ERHRRAITSR MLAGLRQYGN FPLPVRADMN DVLAALARQA GWTVEPDGTT 120 YRQSPPTTTN NNASNMGPYQ VMSVECPVSG SSLRNCSTRA SVDCHPSVPR INESLSPASF 180 DSIVVTESDT KADKFTCTST MNSTECLEAG QLMQELHSGE HGIGLSGTQY VPVFVMLSSG 240 LINNFCQLMD PDSVKQELQQ LKSLKIDGVM VNCWWGIVES WVPQKYEWSG YRELFNIIRD 300 FKLKLQVVMA FHEYGGIDTS GMFISLPQWV MEIGKGNQDI FFTDRQGRRN TECLSWGIDK 360 ERVLRGRTAI EVYFDMMRSF RTEFDDLFAD GLISAVEIGL GASGELKYPS FSERMGWRYP 420 GIGEFQCYDK YSLQNLRKAA TSRGHSFWAK GPDNAGYYNS KPHETGFFCE RGDYDSYYGR 480 FFLHWYRQVL IDHADNVLSL ATLAFEGVQI VVKIPAIYWW YRTSSHAAEV TAGYYNPTNQ 540 DGYSPVFEVL KKHSVTVKFI CSGFQVPETD DALADPDGLS WQILNSAWDK ALPVAGQNTF 600 PCYDREGLMR LVETAKPRND PDHHRFSFFA FQQPSPLVQS AICISELDYF IKSMHGEIIN 660 NVES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1v3i_A | 1e-121 | 230 | 618 | 11 | 401 | Beta-amylase |
1wdq_A | 1e-121 | 230 | 618 | 11 | 401 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016463704.1 | 0.0 | PREDICTED: beta-amylase 8-like | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A1S3ZH49 | 0.0 | A0A1S3ZH49_TOBAC; Beta-amylase | ||||
STRING | XP_009769112.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1607 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.1 | 0.0 | beta-amylase 2 |
Publications ? help Back to Top | |||
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