PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016463661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 600aa MW: 66839 Da PI: 8.2437 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.1 | 1.6e-32 | 211 | 267 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++++ei+Y+g Hnh+ XP_016463661.1 211 DDGYTWRKYGQKHVKGSEFPRSYYKCTQQNCPVKKKVERSP-DGQITEIVYKGAHNHH 267 8****************************************.***************8 PP | |||||||
2 | WRKY | 104.7 | 4.9e-33 | 415 | 473 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+ ++ k v++tYeg+Hnhe XP_016463661.1 415 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERAPDNLKSVITTYEGKHNHE 473 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-27 | 206 | 268 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-25 | 208 | 268 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-36 | 210 | 268 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 211 | 267 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.814 | 211 | 269 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.6E-36 | 400 | 475 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-28 | 408 | 475 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.321 | 410 | 475 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-38 | 415 | 474 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-26 | 416 | 473 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MERNIGEPTD DWNSQIVGNL DSETMLDTQE SDVKIEERSG NTENGSLFPN NNNKRSSIAE 60 RRAAKCGFNA STISIARFRV TTTSMPEMSP PTARPTFLTI PPGLTPAALL DSPVMLPNSL 120 APQSPTTGSF HFSNINQENR MKSTPQIARD HFEFPVESPK ATALKNCSRE TNVGQNMSCI 180 GLTNIHESGN CTRRANQYEQ RSNNITPNGS DDGYTWRKYG QKHVKGSEFP RSYYKCTQQN 240 CPVKKKVERS PDGQITEIVY KGAHNHHKSQ PPRRATMSST AYGLGEMSEG NIGGSNSWQF 300 GRNKDVRAPS GLDRTSSASV LTDVSDSLML NYQNTNMNAF ESATPEPSST LASRDDEDED 360 RATEGSTSLG DDVDDYAFDH KRRRREFYSA ETSLSSRTAR EPRVVVQIES EIDILDDGYR 420 WRKYGQKVVK GNPNPRSYYK CTSAGCPVRK HVERAPDNLK SVITTYEGKH NHEVPSANKT 480 NCAISGNQAL TSTSKPHKVS NSGMQVQDCN RKPFDYVRIG AASSIYDLKF PTNLRSSPLS 540 YASFLLSPNP LQMPEFPLPM SLPFGPNIVP PLAGFHFNAG EDQKYIYSRQ QQKFETSERQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-33 | 211 | 476 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-33 | 211 | 476 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR559678 | 0.0 | KR559678.1 Nicotiana benthamiana WRKY transcription factor (WRKY79) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794073.1 | 0.0 | PREDICTED: probable WRKY transcription factor 4 | ||||
Refseq | XP_016463661.1 | 0.0 | PREDICTED: WRKY transcription factor SUSIBA2-like | ||||
Swissprot | Q6VWJ6 | 8e-91 | WRK46_HORVU; WRKY transcription factor SUSIBA2 | ||||
TrEMBL | A0A1S3ZH65 | 0.0 | A0A1S3ZH65_TOBAC; WRKY transcription factor SUSIBA2-like | ||||
TrEMBL | A0A1U7XT17 | 0.0 | A0A1U7XT17_NICSY; probable WRKY transcription factor 4 | ||||
STRING | XP_009794073.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5767 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26440.1 | 1e-85 | WRKY DNA-binding protein 34 |