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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016463604.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 440aa MW: 50204.2 Da PI: 4.8241 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29 | 2.2e-09 | 17 | 59 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+++ +k+++++C ++ +lC++C ++ H+ H++v XP_016463604.1 17 RACDNCIRKRARWYCPADDAFLCQNCDSSVHSAnplarrHERV 59 67*****************************667888888876 PP | |||||||
2 | CCT | 68.1 | 2.3e-23 | 387 | 430 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+K+irYe+RK +Ae+RpR+KGrFvk++ XP_016463604.1 387 REARVSRYREKRRTRLFSKTIRYEVRKLNAEKRPRMKGRFVKRS 430 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.8E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.865 | 14 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.02E-10 | 17 | 61 | No hit | No description |
Pfam | PF00643 | 1.1E-7 | 17 | 59 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.0E-18 | 387 | 429 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.904 | 387 | 429 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MVSDRKLASA MGGKTTRACD NCIRKRARWY CPADDAFLCQ NCDSSVHSAN PLARRHERVR 60 LKTSPLKESS PDENFPNLES PVSVSLPSWH RGFTRKARTP RNGRKVSKST EEEEEEEVIL 120 KNPIHLVPEI LSDENSLDEN EEQLLYRVPI FDPFVAELCT SATRNDQIEN VQTATETDPE 180 FKLESKEMQK HDICNDDLNR FHGMLPSEME LAEFAADVES LLGKGLEDES FDMEGLGLLG 240 GCNKEENSME CSMVSNEKVK IEDEVVMDTT TTSHDIDING DTFEFKFDYD SPININGEDE 300 VGEVVMKING EDGVVGDGNY NEKKKILLNL DYESVLTAWA DQRSPWTNGE RPELDSNDCW 360 PDCMGNCGTI HPYGIMNGHT TMIDRGREAR VSRYREKRRT RLFSKTIRYE VRKLNAEKRP 420 RMKGRFVKRS NLVPNYPLLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 3e-62 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 3e-62 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016463604.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A1S3ZGW4 | 0.0 | A0A1S3ZGW4_TOBAC; zinc finger protein CONSTANS-LIKE 16-like | ||||
STRING | XP_009627333.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 2e-97 | B-box type zinc finger protein with CCT domain |