PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016463602.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 245aa MW: 27324.2 Da PI: 7.1662

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016463602.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.1	6.8e-29	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C l+p++ p++q++++ +++k++G++ + +l+++ p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++ +q+ XP_016463602.1 4 SCNGCRVLRKGCSENCSLRPCLqwirsPDSQANATVFLAKFYGRAGLFNLINSGPDHLRPAIFRSLLYEACGRIINPVHGSVGLMCSGNWSRCQE 98 6********************************************************************************************** PP DUF260 91 kaelallk 98 ++e +l + XP_016463602.1 99 AVESVLKG 106 99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.152	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS LRPCLQWIRS PDSQANATVF LAKFYGRAGL FNLINSGPDH 60 LRPAIFRSLL YEACGRIINP VHGSVGLMCS GNWSRCQEAV ESVLKGSTIM QIPINDDNNT 120 DNQESHQIMP LKGCDIRHIS KNNSTDIHQV VKTRNRFKRK AKVETTATEY MINEPGPLKF 180 SITGWDFDHH MEEDELKRAP SHDSFSVETV EPSLVNRVEP AVLPVKLEEG GDVGLELTLG 240 LMSPA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016463602.1	0.0	PREDICTED: LOB domain-containing protein 40-like
Swissprot	Q9M886	7e-70	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1S3ZH71	0.0	A0A1S3ZH71_TOBAC; LOB domain-containing protein 40-like
STRING	XP_009586694.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-72	LOB domain-containing protein 41