PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 225aa MW: 24631 Da PI: 8.1916

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016463368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.2	2.1e-41	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l +++e++r d+++slvyeA++r+rdPvyG++g i++lqqq++ l+ el+ XP_016463368.1 45 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVSENQRADTANSLVYEANVRLRDPVYGCMGAISALQQQVQALQMELN 139 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_016463368.1 140 VVRAE 144 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.199	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-41	45	142	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSRERERYEE IGKKIKREAD DYSQMGRRYL LGNPGTTTTL NTVTPCAACK LLRRRCAQEC 60 PFSPYFSPHE PQKFASVHKV FGASNVSKML MEVSENQRAD TANSLVYEAN VRLRDPVYGC 120 MGAISALQQQ VQALQMELNV VRAEILKYKF GDTTTLTNLP SSHISSLLAS GAVSVVAALP 180 PPPPPPPPLS LPSTISSSSD AMYAQPSTTS EFSTISSENN ISYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	38	160	4	127	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	38	160	4	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-100	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-100	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009591808.1	1e-167	PREDICTED: LOB domain-containing protein 15
Refseq	XP_016463368.1	1e-167	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	7e-84	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1S3ZFY9	1e-165	A0A1S3ZFY9_TOBAC; LOB domain-containing protein 15-like
STRING	XP_009591808.1	1e-166	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	7e-71	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]