PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462730.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 465aa    MW: 51917.3 Da    PI: 6.9373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462730.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.9e-13150172426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C ++++tGtCkyG +CkF+H+
  XP_016462730.1 150 ADCAYYMKTGTCKYGLNCKFNHP 172
                     68********************8 PP
2zf-CCCH20.39.5e-07179198827
                     GGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                     +++  G CkyG++Ck+ H++
  XP_016462730.1 179 YYLTEGGCKYGNTCKYYHSR 198
                     99****************95 PP
3zf-CCCH40.93.4e-13219243226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C++++rtG CkyG++C+F+H+
  XP_016462730.1 219 GEKDCPYYMRTGSCKYGSNCRFHHP 243
                     7889********************9 PP
4zf-CCCH28.82e-09355379125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     ++++ C++f +tG Cky ++CkF+H
  XP_016462730.1 355 PGQPDCSYFIKTGDCKYRSNCKFHH 379
                     5789********************* PP
5zf-CCCH31.92.3e-10402427227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f++r+G+Ck+G+ CkF H++
  XP_016462730.1 402 DQAVCSFYSRYGICKFGPACKFGHPE 427
                     6789******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-5146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145146174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6148175IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10150172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5152171IPR000571Zinc finger, CCCH-type
SMARTSM003561.5175198IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.31178199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4179198IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7217244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718217245IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-11219243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-7219245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-6223242IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041354381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878354382IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4356379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5359383IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5400427IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474400428IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-8402427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5402428IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MKAIESQQRI QNLNDSTLEK QDVGLDPQPL FSSDPSVQNP PQNLPDAVEN DDDDEIALQF  60
ICKELQGLVL NQAYIEERSQ GENHEENGRE KSENECGDNY YGGGDYTWSE NGYENENDVE  120
NENSDVTGSK QWGFKGNRKG LNYPLRPDAA DCAYYMKTGT CKYGLNCKFN HPSRRRNQYY  180
LTEGGCKYGN TCKYYHSRRK GAISPVLNIN FLGLPIRPGE KDCPYYMRTG SCKYGSNCRF  240
HHPDPSTVAG GDPSSGYNNG GSAPVKSAPY PAGSSWSSPR ALNETASFVP VVYPASQGIP  300
LLSPQWNGYL APVYPTSGKS LPTPPEFIRK DPATKTNFYT RAQQPWLVEE YPERPGQPDC  360
SYFIKTGDCK YRSNCKFHHR KNQTSKTNMS ALNDKGLPLR PDQAVCSFYS RYGICKFGPA  420
CKFGHPEHYD NSASSIGSVF DQPPFGNSAT SYGSRWRGKE TEVAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260201e-34AC226020.1 Solanum lycopersicum chromosome 6 clone C06SLm0127C05, complete sequence.
GenBankHG9754451e-34HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-34HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462730.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X2
TrEMBLA0A1S3ZE250.0A0A1S3ZE25_TOBAC; zinc finger CCCH domain-containing protein 43-like isoform X2
STRINGXP_009803257.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-101C3H family protein