PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462704.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 514aa    MW: 57770.8 Da    PI: 9.9232
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.24e-0880122147
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                     +++ GV+ +k  g++ A I+dp     + k+++lg+f ta+eA  a+ 
  XP_016462704.1  80 TKFAGVHKRK-CGKYGAAIKDPI----KkKKVWLGSFKTAQEASNAYL 122
                     6899***999.7*********72....35*****************95 PP
2AP234.84e-11228272452
             AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     +G+r+ k +g++ A Irdp    +r k+++lg+f+t eeA +a+  ++ +
  XP_016462704.1 228 HGIRRQK-NGKYGAVIRDP----IRlKQIWLGTFDTVEEASEAYFSYKSE 272
                     69*9888.8*********8....369******************988766 PP
3AP239.11.9e-12319365252
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     ++ GV+ +k +g++ +eI  p     + k+++lg+fgtaeeA +a+   +++
  XP_016462704.1 319 HIVGVHKNK-WGKYTSEITNPI----TkKKIWLGTFGTAEEASRAYQSKKLE 365
                     789***999.*******99972....36*****************9776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.71E-1280121No hitNo description
Gene3DG3DSA:3.30.730.103.5E-1281121IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-1081128IPR016177DNA-binding domain
PROSITE profilePS5103212.7681140IPR001471AP2/ERF domain
SMARTSM003802.3E-581139IPR001471AP2/ERF domain
SMARTSM003801.8E-4226274IPR001471AP2/ERF domain
PROSITE profilePS5103212.734226286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-11228266IPR001471AP2/ERF domain
PfamPF008472.3E-4228274IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-9228270IPR016177DNA-binding domain
CDDcd000182.92E-12229266No hitNo description
PfamPF008472.7E-7318362IPR001471AP2/ERF domain
CDDcd000185.21E-14318359No hitNo description
PROSITE profilePS5103214.341319381IPR001471AP2/ERF domain
SMARTSM003807.8E-8319373IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-12320367IPR016177DNA-binding domain
PRINTSPR003674.2E-5320331IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-14322368IPR001471AP2/ERF domain
PRINTSPR003674.2E-5342358IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
METVAEQKET EEKTSNKKQN KLTQVVILDS DAVVSSASES QESRRRWSAE ILDYKVKEQN  60
HNHNHNHMDS NSTVMDLHAT KFAGVHKRKC GKYGAAIKDP IKKKKVWLGS FKTAQEASNA  120
YLVKQSEFAA QLELLKANQD STKTKSKSSA SVQLRQKIPS SQLKSQGSNS TNTTNAAERS  180
KTNGKNLFIR EIRKDSFQEK QGTRRSSSDG CNINTVTTSS TKAKLSLHGI RRQKNGKYGA  240
VIRDPIRLKQ IWLGTFDTVE EASEAYFSYK SEFDKLCLLG NKENKPKSCD QIQHESPVGA  300
SLSLDTASVG RDKRRKTTHI VGVHKNKWGK YTSEITNPIT KKKIWLGTFG TAEEASRAYQ  360
SKKLEFQKLV KAKQKQCTNN QTHFTGESSD QRIDSREKRQ SVSMTRNLLG TSLNTAEEAF  420
RAYHQSKEFD FQCSTKSGLQ NNMPTDSSGG EKKQEGQVDE DLWMGHWIQL PGGSEVKFSL  480
KLGLPIIDNY GSLLGEFRCL DDLSICYTDD ECFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186104KRKCGKYGAAIKDPIKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462704.10.0PREDICTED: uncharacterized protein LOC107785831
TrEMBLA0A1S3ZEC40.0A0A1S3ZEC4_TOBAC; uncharacterized protein LOC107785831
STRINGXP_009592504.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-14ERF family protein