PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462422.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 507aa    MW: 55146.5 Da    PI: 5.3791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-09327375355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_016462422.1 327 NSHSLAERIRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 375
                     58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.50E-11322379No hitNo description
SuperFamilySSF474594.45E-17322393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.434324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16325391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6327375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-10330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDIASKNDSE PEKRNNEEVV NYQSPNISSE WQLSGSNLTN VSMGMIQSNN QMVDTFCPTS  60
WDQPTNSPSL GFCDANVQIN PSTSNPLVTL GPNWTPNAML KGGMFLPPAP MMLPQSLAQF  120
PADSDFIERA ARFSCFSGGN FGDMMNSFSL PESMNPYYRG PPPMQGPREL LASNGLKSPF  180
AQKQHLSNVA ESSKDVSLTV DHRDTERSPL KNEKKSENFD EVGAVSGNES GEAECSGRQE  240
EMDGAGEESY GKNIGSKKRK RGGKDTEPQQ PPAESGKDQI EIQKAEQNLN SVAGKSGGKN  300
GKQGSQASDP TKEDYIHVRA RRGQATNSHS LAERIRREKI SERMKFLQDL VPGCNKVTGK  360
AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNIDGLL AKNILQSRAG PSSSLAFPPD  420
MTMPYPPLHP PQPGYGIPSD AFRRAITPHL AATSGGPSEY KHPSSEGPSV WDNELHNIVQ  480
MGLNSSIALS SEDLSGSLPA GRMKAEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462422.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_016462423.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A1S3ZDS80.0A0A1S3ZDS8_TOBAC; transcription factor bHLH49-like
STRINGXP_009767242.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-94bHLH family protein