PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016462299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 813aa MW: 90501.1 Da PI: 6.3873 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74 | 1.8e-23 | 179 | 280 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_016462299.1 179 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEG 270 99****************************86333.45679************************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l+++++r+ XP_016462299.1 271 GDLRLGIRRA 280 999**99986 PP | |||||||
2 | Auxin_resp | 120.2 | 1.6e-39 | 305 | 386 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s ks+F+v+Y+Pras+++Fvv+++k++k++++++ vG+Rfkm+f+ +ds+err+sG+v+g+sd+dp+rWpnSkWr+L XP_016462299.1 305 VATAVSAKSTFHVFYSPRASHADFVVPYQKYMKSISNRIPVGTRFKMRFDLDDSPERRYSGVVTGISDMDPFRWPNSKWRCL 386 6899*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.19E-43 | 171 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-40 | 172 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.15E-22 | 177 | 279 | No hit | No description |
Pfam | PF02362 | 2.4E-21 | 179 | 280 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.901 | 179 | 281 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-23 | 179 | 281 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.0E-33 | 306 | 386 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 5.89E-11 | 678 | 764 | No hit | No description |
Pfam | PF02309 | 3.2E-6 | 682 | 769 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 21.745 | 685 | 769 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 813 aa Download sequence Send to blast |
MEIDLNHAVV SEVEKNACCN GECDKRGVGG SCVNCNLSTT STSSCSSNAS SSSSSSLTLS 60 SIYMELWHAC AGPLTSLPKK GNVVVYFPQG HMEEAVSVSP FSPIKMDFPT FGLQPQIFCK 120 VEDVQLLANK ENDEVYTQLT LLPLPESVAI SLKGKEHEDL GVDEEGNGVN PGKSASHMFC 180 KTLTASDTST HGGFSVPRRA AEDCFPPLDY KEQRPSQELI AKDLHGVEWK FRHIYRGQPR 240 RHLLTTGWSI FVSQKNLVSG DAVLFLRGEG GDLRLGIRRA ARPRNGLPEL IIKSQYSGSD 300 VLSAVATAVS AKSTFHVFYS PRASHADFVV PYQKYMKSIS NRIPVGTRFK MRFDLDDSPE 360 RRYSGVVTGI SDMDPFRWPN SKWRCLMVRW DEDIMSNHQE RVSPWEIDSS VSLPPLSIQS 420 PRLKKLRTSQ QAPSLDSHFA GGSALLDFEE SVRSSKVLQG QENLGLISPP YGCDKTVRPL 480 DFELQNVARH NLMPTGIENI VVGDFVKTQP PTTYTGFLES NRFPKVLQGQ EICLLRSLTG 540 KGDVNFGAWG KPEFGCNVFS TYQRPKTNFY PLASEGVRNV FLPYNAMYRA GQDPVVHSYI 600 NNNFQRENPT LNQNSIQNGI RREEDGMQKF ANEQRPLEMS KLSIPETNFK NENGGSLNAQ 660 ASCKLFGFSL IKEPSTPSSH SSGKRSCTKV HKQGSLVGRA IDLSRLNGYE DLLVELERLF 720 NMEDLLRDPN KGWRILYTDS ENDMMVVGDD PWHEFCEVVS KIHIYTQEEV EKMTIEGISD 780 DTQSCLEEAP AFMDASKSSS VGQPDSSPTV IRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-116 | 45 | 408 | 2 | 353 | Auxin response factor 1 |
4ldw_A | 1e-116 | 45 | 408 | 2 | 353 | Auxin response factor 1 |
4ldw_B | 1e-116 | 45 | 408 | 2 | 353 | Auxin response factor 1 |
4ldx_A | 1e-116 | 45 | 408 | 2 | 353 | Auxin response factor 1 |
4ldx_B | 1e-116 | 45 | 408 | 2 | 353 | Auxin response factor 1 |
4ldy_A | 1e-116 | 45 | 408 | 2 | 353 | Auxin response factor 1 |
4ldy_B | 1e-116 | 45 | 408 | 2 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ340259 | 0.0 | DQ340259.1 Lycopersicon esculentum auxin response factor 4 (ARF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779766.1 | 0.0 | PREDICTED: auxin response factor 4 | ||||
Refseq | XP_016462299.1 | 0.0 | PREDICTED: auxin response factor 4-like | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A1S3ZD94 | 0.0 | A0A1S3ZD94_TOBAC; Auxin response factor | ||||
TrEMBL | A0A1U7WR30 | 0.0 | A0A1U7WR30_NICSY; Auxin response factor | ||||
STRING | XP_009779766.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5143 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |