PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462296.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 353aa    MW: 39299.1 Da    PI: 7.2241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07128148526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd C +aHg
  XP_016462296.1 128 ACPDFRK-GLCKKGDACEYAHG 148
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-5123149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.084124150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5127150IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5128148IPR000571Zinc finger, CCCH-type
SMARTSM0035616158181IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.155158182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMMIGRSPHS HPTVQVPPWD VMDDPTVDVY SPFSVTPNNY STSPDSGFDA LTALQRYLPS  60
NANDVLLDSD GLDIPVDAFS CDNFRMYEFK VRKCARGRSH DWTECPYAHP GEKARRRDPR  120
KYHYSGTACP DFRKGLCKKG DACEYAHGVF ECWLHPARYR TQPCKDGTHC RRRVCFFAHT  180
PEQLRVLPQN SPRSHAAESC DSFDGSPSRL GFDSFSSSPP FDSPPMTPSG SLSLNSVNGL  240
AESMRNMQIG MVRGMSSSPT WGLQMGSPGF GSPRSPSTLR PGFMSLPTTP TRKPTLSGLA  300
VFDQWEKTYE EEPAMERVES GKDLRARIYA KLSMENSLDS GSPDVGWVSE LVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784195.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
RefseqXP_016462296.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-121C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S3ZD060.0A0A1S3ZD06_TOBAC; zinc finger CCCH domain-containing protein 20-like
TrEMBLA0A1U7XCL20.0A0A1U7XCL2_NICSY; zinc finger CCCH domain-containing protein 20-like
STRINGXP_009784195.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-114C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]