PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016462178.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 103aa MW: 11370.4 Da PI: 11.0414 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 40.5 | 9e-13 | 2 | 24 | 36 | 58 |
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 +pylheSRh hA++R RgsgGrF XP_016462178.1 2 QPYLHESRHLHAVNRVRGSGGRF 24 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 17.626 | 1 | 27 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.8E-10 | 2 | 24 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MQPYLHESRH LHAVNRVRGS GGRFLSSKKV NQSDPNSYPT NSTSSQDSVE RENSTSAFSS 60 VRKDVNNGVS FQQQPDHRAF GVSSHMAITM QGNGAQQRAP IVR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016462178.1 | 1e-70 | PREDICTED: nuclear transcription factor Y subunit A-6-like | ||||
TrEMBL | A0A1S3ZCP8 | 3e-69 | A0A1S3ZCP8_TOBAC; nuclear transcription factor Y subunit A-6-like | ||||
STRING | XP_009592750.1 | 6e-67 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5009 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34720.1 | 4e-12 | nuclear factor Y, subunit A4 |