PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462177.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 526aa    MW: 59034.3 Da    PI: 8.3064
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.3e-19167257199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k l++s+v++  ++ lp +f+++h    ++++ ++le+e+g+++e+k+i +k++    l++GW++++ a++L egD++vF+l+  ++f  +v 
  XP_016462177.1 167 FMKLLVRSHVGSCFWMGLPVPFCKNHLP--RKDTPVILESETGEEFEIKYIAEKTG----LSAGWRKYCTAHKLVEGDVLVFQLVAPTRF--KVY 253
                     899********************99953..45567***************777777....***********************9987777..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     v+r+
  XP_016462177.1 254 VIRA 257
                     8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-22161258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-20161258IPR015300DNA-binding pseudobarrel domain
CDDcd100174.94E-25165256No hitNo description
PROSITE profilePS5086313.183167258IPR003340B3 DNA binding domain
SMARTSM010199.1E-22167258IPR003340B3 DNA binding domain
PfamPF023621.6E-16167257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MKIKVVHRSE PPTQEHRISY PDTPKKEVFD EEPLGTQLPE PDPDPDPEPA SSKDNNLSVV  60
DASNPINSVT LSAQTLSSSL LGKRRRKPKE IIDQISPIPF RRKRAIKKQP SASQSNNAVG  120
DAGGKSISTK QERCTADGSG TATQMKSPII IRAEEFLSNI GNEYPSFMKL LVRSHVGSCF  180
WMGLPVPFCK NHLPRKDTPV ILESETGEEF EIKYIAEKTG LSAGWRKYCT AHKLVEGDVL  240
VFQLVAPTRF KVYVIRANDL KEVDGALSLL NLDAPPKQSD AEGAPAHNLK KRQKKSLPLT  300
VVHRRRRKAD LSKQLLALEA QSGNDSDEVA SESLEGSRSS GLAVNFRDIK NLEEFHILVN  360
GVCIDSELPE DIRRKYYELC CNKSAFLHDR LLQGLHCKLV AGVIFEVVNI ADAIRACKLT  420
TKRTEFDIWE KSLKSFELLG MNVGFLRTRL RWLVSLAFDS EGASDTKRYW EAKNEWSRAE  480
DEIRNLETKL VELKKTSEKY GADVEALKSK AESYELMFQG EVNAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289307KKRQKKSLPLTVVHRRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462177.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A1S3ZD660.0A0A1S3ZD66_TOBAC; B3 domain-containing protein Os01g0234100-like
STRINGXP_009803081.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-36B3 family protein