PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461998.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 452aa    MW: 50970.3 Da    PI: 6.2626
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.2e-1510733299
                    --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    ++++  led+sg++W+v++  + ++g+  +++GW +F +++gL+ gDf+vF++++ + f   v++++k
  XP_016461998.1 10 TDQETYLEDSSGQRWRVTV--CDHKGSLAIRQGWPKFSSEHGLNLGDFLVFYYVEGQYF--IVQIYDK 73
                    456899*************..*******************************9876666..9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.507174IPR003340B3 DNA binding domain
SMARTSM010190.0035274IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-16276IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-12272No hitNo description
PfamPF023623.4E-12273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-161078IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MFARSVSHLT DQETYLEDSS GQRWRVTVCD HKGSLAIRQG WPKFSSEHGL NLGDFLVFYY  60
VEGQYFIVQI YDKSGCQKIK FYSDFCKGKR KTRTYPEKTS QVKLLQTTDI NPVNKRSKIS  120
AVSESEKVTC KAHITKFATN IDADTGKGQL VYPAVYVDES FCMVDRDAQY HQGDDRLCLH  180
LSSFEMPASK PLAEGTSSLL KADDGNSNHV ETNLRSQTEP NLVVVADYLN SEELLPKFEA  240
EITGSDMVPA EDIPLLSQKD QNDCPSGIIS SSFLKPAANV NKNDDVSNVT KYQNHWMSTD  300
TNCHMMLQSD NKDGRCTGIN QITREKSNDA SQFARETRLV KKEFEETAAK AYYPARAISA  360
RETRLVKKEF EETAAKAYYP ARAISDSGKE PANGNEKVIK SEPADSGDMP SLTAVSYSCL  420
LEVDGRDFLE LPESWRKYLM KKAKLERWII FL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461998.10.0PREDICTED: uncharacterized protein LOC107785253 isoform X7
RefseqXP_016461999.10.0PREDICTED: uncharacterized protein LOC107785253 isoform X7
TrEMBLA0A1S3ZCE00.0A0A1S3ZCE0_TOBAC; uncharacterized protein LOC107785253 isoform X7
STRINGXP_009616981.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-08B3 family protein