PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461994.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 491aa    MW: 55590.8 Da    PI: 7.0113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.4e-1826116199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   d + +++l++p  fa++ ++   ++++  led+sg++W+v++  + ++g+  +++GW +F +++gL+ gDf+vF++++ + f   v+
  XP_016461994.1  26 FFKVM--IDKSFRKILYFPPMFARSVSHL--TDQETYLEDSSGQRWRVTV--CDHKGSLAIRQGWPKFSSEHGLNLGDFLVFYYVEGQYF--IVQ 112
                     89999..88999999**********9766..4568***************..*******************************9876666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_016461994.1 113 IYDK 116
                     9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2023119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2223119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0724117IPR003340B3 DNA binding domain
CDDcd100175.25E-1825115No hitNo description
PfamPF023621.2E-1526116IPR003340B3 DNA binding domain
SMARTSM010191.3E-1326117IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MGCEKEASDE CKQNSLLFHG KRVSSFFKVM IDKSFRKILY FPPMFARSVS HLTDQETYLE  60
DSSGQRWRVT VCDHKGSLAI RQGWPKFSSE HGLNLGDFLV FYYVEGQYFI VQIYDKSGCQ  120
KIKFYSDFCK GKRKTRTYPE KTSQVKLLQT TDINPVNKRS KISAVSESEK VTCKAHITKF  180
ATNIDADTGK GQLVYPAVYV DESFCMVDRD AQYHQGDDRL CLHLSSFEMP ASKPLAEGTS  240
SLLKADDGNS NHVETNLRSQ TEPNLVVVAD YLNSEELLPK FEAEITGSDM VPAEDIPLLS  300
QKDQNDCPSG IISSSFLKPA ANVNKNDDVS NVTKYQNHWM NCHMMLQSDN KDGRCTGINQ  360
ITREKSNDAS QFARETRLVK KEFEETAAKA YYPARAISAR ETRLVKKEFE ETAAKAYYPA  420
RAISDSGKEP ANGNEKVIKS EPADSGDMPS LTAVSYSCLL EVDGRDFLEL PESWRKYLMK  480
KAKLERWIIF L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461994.10.0PREDICTED: uncharacterized protein LOC107785253 isoform X3
TrEMBLA0A1S3ZCD50.0A0A1S3ZCD5_TOBAC; uncharacterized protein LOC107785253 isoform X3
STRINGXP_009616981.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.15e-11B3 family protein