PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 463aa MW: 50206.9 Da PI: 8.3581

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016461914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.6	4.8e-40	170	247	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls+akey+r+h+vC+ hsk+p+v+++g+ +rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ XP_016461914.1 170 RCQVEGCSHDLSSAKEYYRKHRVCDSHSKCPKVIIAGVARRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 247 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.3E-32	164	232	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.966	168	245	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.62E-37	169	250	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-30	171	244	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MEWNAKWDWG NLVMFGSEAA KSPKELQLTD WGVEEDGELD AGSFNLSSGG SGSGSGTGGY 60 VSDVGHGSSI KSSISASTDS SPKEGLKACN FSFDGSSEDL SKKVKLCSRN SPPMEASVGS 120 VEPLIGLKLG KRTFETIGGA KVSSFPEKHV SSAAAAKKTK SSTQNAPTPR CQVEGCSHDL 180 SSAKEYYRKH RVCDSHSKCP KVIIAGVARR FCQQCSRFHS LSEFDEKKRS CRRRLSDHNA 240 RRRKPQQETI QFNSARLSSL FYDSRQPMNL VLNHSQLVQS RAAANSTWES TEETKFSITR 300 GSTPKPERAG STNGLSLLPG IQLSRAVGAH SNVSSCLLLP SKGHTSEVFN RGATESMFNM 360 GTGREFPRAL SLLSTNSWGS SEPETVSLNN PTHANQSSMP EQMMQAIPQG VPLMSCEYWQ 420 GEQPSSDPRD HTLAANSHAG GSFQGIELFK PPFDTDFYLN ALN

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MEWNAKWDWG NLVMFGSEAA KSPKELQLTD WGVEEDGELD AGSFNLSSGG SGSGSGTGGY  60
VSDVGHGSSI KSSISASTDS SPKEGLKACN FSFDGSSEDL SKKVKLCSRN SPPMEASVGS  120
VEPLIGLKLG KRTFETIGGA KVSSFPEKHV SSAAAAKKTK SSTQNAPTPR CQVEGCSHDL  180
SSAKEYYRKH RVCDSHSKCP KVIIAGVARR FCQQCSRFHS LSEFDEKKRS CRRRLSDHNA  240
RRRKPQQETI QFNSARLSSL FYDSRQPMNL VLNHSQLVQS RAAANSTWES TEETKFSITR  300
GSTPKPERAG STNGLSLLPG IQLSRAVGAH SNVSSCLLLP SKGHTSEVFN RGATESMFNM  360
GTGREFPRAL SLLSTNSWGS SEPETVSLNN PTHANQSSMP EQMMQAIPQG VPLMSCEYWQ  420
GEQPSSDPRD HTLAANSHAG GSFQGIELFK PPFDTDFYLN ALN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-26	171	244	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	243	KKRSCRRRLSDHNARRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC072721	0.0	LC072721.1 Nicotiana tabacum NtabSPL2 mRNA for squamosa promoter binding protein spl2, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312326.1	0.0	squamosa promoter-binding-like protein 12
Refseq	XP_016461913.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
Refseq	XP_016461914.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
TrEMBL	A0A0C5DEV8	0.0	A0A0C5DEV8_TOBAC; SBP-box 2
STRING	XP_009766987.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	5e-56	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Entrez Gene	107785188

Publications ? help Back to Top
Zhang T,Wang J,Zhou C The role of miR156 in developmental transitions in Nicotiana tabacum. Sci China Life Sci, 2015. 58(3): p. 253-60 [PMID:25682394] Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Dev. Genes Evol., 2016. 226(1): p. 1-14 [PMID:26635304]