PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016461736.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 36682.5 Da PI: 6.0496 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.8 | 2.5e-15 | 45 | 94 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P+ ++K + a+ L ++++Y+++Lq XP_016461736.1 45 RSKHSVTEQRRRSKINERFQILRDLIPHT----DQKRDTASFLLEVIQYVQYLQ 94 899*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-18 | 41 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-22 | 42 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.84 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.24E-14 | 45 | 98 | No hit | No description |
Pfam | PF00010 | 1.0E-12 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-11 | 49 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence Send to blast |
MKGVKGHQEE EEEEEDEIGL KKDATPPSSS NTKDGKNNDK ASAIRSKHSV TEQRRRSKIN 60 ERFQILRDLI PHTDQKRDTA SFLLEVIQYV QYLQEKVQKH EGSYQPWSSE PTKLMPWRNS 120 HWRMQNLPAH PQALKNGSGP ESTYLGGFDE NPATVTSTVQ PNQQNLIESH PIRDVSIKAM 180 DQHNDLANKA IATHMPLQAG MQVAVPNNSA FSDSQPRPVS DQCPNTIDAL NHHEDLTIDG 240 GTISISSPYS QGLLNSLTQA LENTGLDLSQ ATISVQINFG KRADRGMTSG PSIAKDNENP 300 PPSSNQHMDH FREASNDEDL DQAQKRLKI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ617158 | 1e-166 | AJ617158.1 Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np381. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594832.1 | 0.0 | PREDICTED: transcription factor BIM2 | ||||
Refseq | XP_016461736.1 | 0.0 | PREDICTED: transcription factor BIM2-like | ||||
Swissprot | Q9CAA4 | 3e-97 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A1S3ZBF0 | 0.0 | A0A1S3ZBF0_TOBAC; transcription factor BIM2-like | ||||
STRING | XP_009594832.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4426 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69010.1 | 9e-96 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|