PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461437.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 418aa    MW: 48520.3 Da    PI: 6.4699
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.44.6e-2495190186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt+q+v++Li+a+++++e+  ++           kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d l
  XP_016461437.1  95 KWTDQMVRLLITAVSYIGEETAAEYggrrkcsnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFSDLNKRYKRLNEILGRGtSCEVVENPVLLDML 189
                     7**************999988864223344567799********************************************669999999998888 PP

        trihelix  86 e 86 
                     +
  XP_016461437.1 190 D 190
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-2293216No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MMPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT IGSMQQDCNQ NISLADHSKG  60
ERGKSASDED EPSFTEDGLN DLNRGKKATP WQRVKWTDQM VRLLITAVSY IGEETAAEYG  120
GRRKCSNLHK KGKWKSVSKV MAERGHFVSP QQCEDKFSDL NKRYKRLNEI LGRGTSCEVV  180
ENPVLLDMLD HVSEKGKEEV RKILSSKHLH YEEMCSYHNG NRLHLPPDLE LQRSLRLALT  240
SRDEHDDNDV RKHLQDDNDE DDHETDMVED EYEESHSLPR EHRLHGMSGG FSKRIKQCQG  300
HEIVTFGNSL TTLDGNRTFS SQPQKANTDA NQMFSEGNKA DILQKQWMDH RSFQLEEQKL  360
QIQAQMLELE KERFNWKRFS RKKDIELEMM RMENERIKLE NECMALELKR KEMLADNV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461437.10.0PREDICTED: uncharacterized protein LOC107784772 isoform X1
TrEMBLA0A1S3ZB380.0A0A1S3ZB38_TOBAC; uncharacterized protein LOC107784772 isoform X1
STRINGXP_009590352.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-147sequence-specific DNA binding transcription factors